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L2_013_000G1_scaffold_1246

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1246_1
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(150..1127)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y7R1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12463.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_013_000G1_scaffold_1246_2
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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comp(1312..2496)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6EJL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA90162.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
peptidase propeptide and YPEB domain protein
L2_013_000G1_scaffold_1246_3
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2655..4235)
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NMV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12560.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L2_013_000G1_scaffold_1246_4
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(4413..5816)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YA47_9FIRM
Signal transduction histidine kinase
L2_013_000G1_scaffold_1246_5
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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comp(5813..6487)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F451_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB03726.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_013_000G1_scaffold_1246_6
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6558..8696)
DNA (2139bp) protein (713aa)
Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XWE2_9FIRM
Competence protein ComEA helix-hairpin-helix repeat region {ECO:0000313|EMBL:CDA13196.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
Transcriptional accessory protein
L2_013_000G1_scaffold_1246_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8849..9718
DNA (870bp) protein (290aa)
Cof-like hydrolase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MCA2_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:ERJ96928.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
HAD-superfamily hydrolase, subfamily IIB
L2_013_000G1_scaffold_1246_8
Mogibacterium timidum, Mogibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9715..10029
DNA (315bp) protein (105aa)
Thioredoxin n=1 Tax=Mogibacterium sp. CM50 RepID=J5U485_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1401079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis; Mogibacterium.;" source="Mogibacterium timidum ATCC 33093.;"
thioredoxin
L2_013_000G1_scaffold_1246_9
[Eubacterium] cellulosolvens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10029..10961
DNA (933bp) protein (311aa)
Thioredoxin reductase n=1 Tax=Eubacterium cellulosolvens 6 RepID=I5AT67_EUBCE
Thioredoxin reductase {ECO:0000313|EMBL:EIM56990.1}; TaxID=633697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] cellulosolvens 6.;"
TrxB; thioredoxin reductase
L2_013_000G1_scaffold_1246_10
unknown

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comp(11020..11211)
DNA (192bp) protein (64aa)

This feature has no annotations

L2_013_000G1_scaffold_1246_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11396..12466)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR99859.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted membrane protein
L2_013_000G1_scaffold_1246_12
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12694..14085
DNA (1392bp) protein (464aa)
Putative efflux protein MATE family n=1 Tax=Clostridium sp. CAG:678 RepID=R5KII5_9CLOT
Putative efflux protein MATE family {ECO:0000313|EMBL:CCY66523.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
putative efflux protein, MATE family
L2_013_000G1_scaffold_1246_13
unknown

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comp(14027..14191)
DNA (165bp) protein (55aa)

This feature has no annotations

L2_013_000G1_scaffold_1246_14
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14279..19786)
DNA (5508bp) protein (1836aa)
Ig domain protein group 2 domain protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EGW5_9FIRM
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:CDA89287.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
Ig domain-containing protein
L2_013_000G1_scaffold_1246_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20191..21444)
DNA (1254bp) protein (418aa)
Voltage gated chloride channel family protein n=1 Tax=Clostridium difficile P59 RepID=T4SXM1_CLODI
Clostridium difficile PaLoc containing novel insertion between tcdE and tcdA, strain Ox1485 {ECO:0000313|EMBL:CDF47233.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Chloride ion channel protein
L2_013_000G1_scaffold_1246_16
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21616..22554)
DNA (939bp) protein (313aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9Y969_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51107.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
alpha/beta hydrolase
L2_013_000G1_scaffold_1246_17
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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comp(22570..23805)
DNA (1236bp) protein (412aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
pfkA3; 6-phosphofructokinase (EC:2.7.1.11)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BBS7_9FIRM
L2_013_000G1_scaffold_1246_18
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23874..25235)
DNA (1362bp) protein (454aa)
Metallophosphoesterase n=1 Tax=Clostridium sp. CAG:217 RepID=R6INK2_9CLOT
Metallophosphoesterase {ECO:0000313|EMBL:CDB50895.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein
L2_013_000G1_scaffold_1246_19
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25329..26846)
DNA (1518bp) protein (506aa)
Glucuronide transporter:cation symporter n=1 Tax=Clostridium sp. CAG:678 RepID=R5KN97_9CLOT
Glucuronide transporter:cation symporter {ECO:0000313|EMBL:CCY68238.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
uidB; glucuronide transporter:cation symporter
L2_013_000G1_scaffold_1246_20
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27037..28296)
DNA (1260bp) protein (420aa)
Transporter major facilitator family n=1 Tax=Clostridium sp. CAG:678 RepID=R5KL52_9CLOT
Transporter major facilitator family {ECO:0000313|EMBL:CCY67530.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
major facilitator transporter
L2_013_000G1_scaffold_1246_21
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28398..29300
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KR65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67529.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
type I phosphodiesterase/nucleotide pyrophosphatase
L2_013_000G1_scaffold_1246_22
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29388..30758)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KSM0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67999.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
L2_013_000G1_scaffold_1246_23
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30858..31577)
DNA (720bp) protein (240aa)
GCN5-related N-acetyltransferase n=1 Tax=Clostridium sp. CAG:678 RepID=R5L2S0_9CLOT
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CCY67347.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
GCN5-like N-acetyltransferase
Displaying 23 items

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