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L2_013_000G1_scaffold_1757

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1757_1
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(52..678)
DNA (627bp) protein (209aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDT0_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG30278.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
site-specific recombinase XerD
L2_013_000G1_scaffold_1757_2
Caldicellulosiruptor bescii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(679..1425)
DNA (747bp) protein (249aa)
Transcriptional regulator, XRE family n=1 Tax=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) RepID=B9MR24_CALBD
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACM60128.1}; TaxID=521460 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320); (Anaerocellum thermophilum).;"
L2_013_000G1_scaffold_1757_3
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

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1560..1745
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9L1V2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS52779.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
hypothetical protein predicted by Glimmer/Critica
L2_013_000G1_scaffold_1757_4
unknown

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1745..1996
DNA (252bp) protein (84aa)

This feature has no annotations

L2_013_000G1_scaffold_1757_5
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1998..2297
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LSX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJJ70403.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
hypothetical protein
L2_013_000G1_scaffold_1757_6
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2312..2887
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DA60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG51784.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L2_013_000G1_scaffold_1757_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2901..4685
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6P3P1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC04582.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L2_013_000G1_scaffold_1757_8
unknown

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4699..5055
DNA (357bp) protein (119aa)

This feature has no annotations

L2_013_000G1_scaffold_1757_9
unknown

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4994..5248
DNA (255bp) protein (85aa)

This feature has no annotations

L2_013_000G1_scaffold_1757_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5509..6264
DNA (756bp) protein (252aa)
Sigma-70, region 4 n=1 Tax=Clostridium sp. MSTE9 RepID=J0MXW5_9CLOT
Sigma-70, region 4 {ECO:0000313|EMBL:EJF39229.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA-directed RNA polymerase specialized sigma subunit
L2_013_000G1_scaffold_1757_11
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6410..6685
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Caloramator australicus RC3 RepID=I7LIL3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCJ33057.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
hypothetical protein
L2_013_000G1_scaffold_1757_12
unknown

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comp(7084..7227)
DNA (144bp) protein (48aa)

This feature has no annotations

L2_013_000G1_scaffold_1757_13
unknown

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comp(7344..7484)
DNA (141bp) protein (47aa)

This feature has no annotations

L2_013_000G1_scaffold_1757_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7481..7759)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM39178.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_013_000G1_scaffold_1757_15
unknown

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comp(7756..7908)
DNA (153bp) protein (51aa)

This feature has no annotations

L2_013_000G1_scaffold_1757_16
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

8172..8363
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZKW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15270.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_013_000G1_scaffold_1757_17
Synergistes sp. 3_1_syn1, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

9723..13835
DNA (4113bp) protein (1371aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Synergistes sp. 3_1_syn1 RepID=G9PTQ1_9BACT
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EHL69420.1}; TaxID=457415 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Synergistes.;" source="Synergistes sp. 3_1_syn1.;"
hypothetical protein
L2_013_000G1_scaffold_1757_18
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13832..16396
DNA (2565bp) protein (855aa)
chemotaxis protein CheR n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B49F16
Chemotaxis protein methyltransferase CheR {ECO:0000313|EMBL:KHK01924.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
signal transduction histidine kinase with CheB and CheR activity
L2_013_000G1_scaffold_1757_19
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16909..17241
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WSC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX73534.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L2_013_000G1_scaffold_1757_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17238..17450
DNA (213bp) protein (71aa)
DNA-binding helix-turn-helix protein n=11 Tax=root RepID=A5Z7U5_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDY33181.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted transcriptional regulators
L2_013_000G1_scaffold_1757_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17582..18031
DNA (450bp) protein (150aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPG7_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EFB75429.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_013_000G1_scaffold_1757_22
unknown

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comp(18068..18613)
DNA (546bp) protein (182aa)

This feature has no annotations

L2_013_000G1_scaffold_1757_23
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18762..19529
DNA (768bp) protein (256aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VXR1_9CLOT
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L2_013_000G1_scaffold_1757_24
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19529..20437
DNA (909bp) protein (303aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W2I1_9CLOT
L2_013_000G1_scaffold_1757_25
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20441..21601
DNA (1161bp) protein (387aa)
putative phosphoglycerate mutase/acetyltransferase (EC:5.4.2.1)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VYI0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37351.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L2_013_000G1_scaffold_1757_26
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21712..23028
DNA (1317bp) protein (439aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IPX7_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDB52413.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
XRE family transcriptional regulator
L2_013_000G1_scaffold_1757_27
unknown

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comp(23120..23236)
DNA (117bp) protein (39aa)

This feature has no annotations

L2_013_000G1_scaffold_1757_28
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23409..24032
DNA (624bp) protein (208aa)
Probable transcriptional regulatory protein HMPREF1526_01624 n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W1K1_9CLOT
Probable transcriptional regulatory protein HMPREF1526_01624 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
conserved hypothetical protein TIGR01033
Displaying 28 items

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