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L2_013_000G1_scaffold_280

Search features with annotation key words

Displaying items 31-60 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_280_31
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32600..33319)
DNA (720bp) protein (240aa)
Tim44-like domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SWU3_9FIRM
Tim44-like domain {ECO:0000313|EMBL:CDC65658.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L2_013_000G1_scaffold_280_32
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33337..34437)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6D5Z2_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04171.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_33
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34453..34737)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U4C6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC65662.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L2_013_000G1_scaffold_280_34
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34936..35805)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SWU6_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04169.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_35
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36215..37714)
DNA (1500bp) protein (500aa)
O-antigen polymerase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C8V8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04168.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_36
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37900..39465)
DNA (1566bp) protein (522aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Ribonuclease Y n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T7G0_9FIRM
conserved hypothetical protein
L2_013_000G1_scaffold_280_37
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40079..40435
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0B8_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04166.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_38
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40567..42513
DNA (1947bp) protein (649aa)
thrS; Threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Threonine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCT0_9FIRM
L2_013_000G1_scaffold_280_39
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42636..44186
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:52 RepID=R6G623_9FIRM
putP; sodium/proline symporter
Sodium/proline symporter {ECO:0000313|EMBL:CCO04164.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_40
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44237..45754)
DNA (1518bp) protein (506aa)
xylan 1,4-beta-xylosidase (Glycoside Hydrolase Family 43 protein) (EC:3.2.1.37)
Xylan 1,4-beta-xylosidase (Glycoside Hydrolase Family 43 protein) {ECO:0000313|EMBL:CCO04163.1}; EC=3.2.1.37 {ECO:0000313|EMBL:CCO04163.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Xylan 1,4-beta-xylosidase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SWP5_CLOC7
L2_013_000G1_scaffold_280_41
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46250..48406
DNA (2157bp) protein (719aa)
Bacterial surface proteins containing Ig-like domains n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY54_9FIRM
putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:CCO04161.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_42
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(48750..50060)
DNA (1311bp) protein (437aa)
Alpha amylase catalytic region n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T844_9FIRM
Glycoside Hydrolase Family 13 protein
Alpha amylase catalytic region {ECO:0000313|EMBL:CDC65909.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_280_43
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

50388..51413
DNA (1026bp) protein (342aa)
Asparaginase/glutaminase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SXJ1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04159.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_44
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

51511..52683
DNA (1173bp) protein (391aa)
F420H2 oxidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDG1_9FIRM
F420H2 oxidase {ECO:0000313|EMBL:CDC65906.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_013_000G1_scaffold_280_45
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(52893..53585)
DNA (693bp) protein (231aa)
4Fe-4S binding domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T102_9FIRM
4Fe-4S binding domain {ECO:0000313|EMBL:CDC65905.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_013_000G1_scaffold_280_46
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

53733..54392
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T840_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04156.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_47
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

54597..55805
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SXI7_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04155.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_48
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56071..56844
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U506_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04154.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_49
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

57026..60358
DNA (3333bp) protein (1111aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ileS; Isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDF6_9FIRM
L2_013_000G1_scaffold_280_50
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(60499..63126)
DNA (2628bp) protein (876aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
valS; Valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3Y3_9FIRM
L2_013_000G1_scaffold_280_51
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(63490..64689)
DNA (1200bp) protein (400aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Phosphofructokinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGC7_9FIRM
pfkA3; Putative 6-phosphofructokinase
L2_013_000G1_scaffold_280_52
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

65034..65588
DNA (555bp) protein (185aa)
SH3 domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U806_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04150.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_53
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65766..66173)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0F7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66923.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L2_013_000G1_scaffold_280_54
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(66205..66480)
DNA (276bp) protein (92aa)
DNA-binding protein HU-beta n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TB45_9FIRM
himA; integration host factor, alpha subunit
DNA-binding protein HU-beta {ECO:0000313|EMBL:CDC66924.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_280_55
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(66831..67034)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3Y9_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04147.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_56
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(67046..67582)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGD1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04146.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_57
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(67649..68275)
DNA (627bp) protein (209aa)
nth; Endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Endonuclease III n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U812_9FIRM
L2_013_000G1_scaffold_280_58
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

68686..70038
DNA (1353bp) protein (451aa)
gdhA; NADP-specific glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THW9_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_280_59
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(70136..71125)
DNA (990bp) protein (330aa)
ldhA; D-lactate dehydrogenase (EC:1.1.1.28)
D-lactate dehydrogenase {ECO:0000313|EMBL:CCO04143.1}; EC=1.1.1.28 {ECO:0000313|EMBL:CCO04143.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
D-lactate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCX2_9FIRM
L2_013_000G1_scaffold_280_60
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

71302..72744
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5P9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67515.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
HTH-type transcriptional regulator
Displaying items 31-60 of 73 in total

View Taxonomy