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L2_013_000G1_scaffold_1353

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1353_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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360..1433
DNA (1074bp) protein (358aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T357_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CDC66625.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_013_000G1_scaffold_1353_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1483..1926)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFH8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04271.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2078..3295
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U751_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66627.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L2_013_000G1_scaffold_1353_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3353..3766
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U1Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC64872.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1353_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4156..6729)
DNA (2574bp) protein (858aa)
Fibronectin type III domain protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C913_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO04269.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L2_013_000G1_scaffold_1353_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6973..7860)
DNA (888bp) protein (296aa)
Metal cation transporter ZIP family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZL7_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04268.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7988..9547
DNA (1560bp) protein (520aa)
LysM domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAC1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04267.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9560..11035
DNA (1476bp) protein (492aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466, ECO:0000313|EMBL:CCO04266.1}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Stage IV sporulation protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T361_9FIRM
spoIVA; Stage IV sporulation protein A
L2_013_000G1_scaffold_1353_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11121..11459)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFI3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04265.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11481..12485)
DNA (1005bp) protein (335aa)
prmA; ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Ribosomal protein L11 methyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U754_9FIRM
L2_013_000G1_scaffold_1353_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12623..13357)
DNA (735bp) protein (245aa)
tagH; ABC transporter ATPase component, teichoic acid transport (EC:3.6.3.40)
ABC transporter ATPase component, teichoic acid transport {ECO:0000313|EMBL:CCO04263.1}; EC=3.6.3.40 {ECO:0000313|EMBL:CCO04263.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC-type polysaccharide/polyol phosphate transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZM1_9FIRM
L2_013_000G1_scaffold_1353_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13385..14239)
DNA (855bp) protein (285aa)
Putative ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAC7_9FIRM
tagG; ABC transporter membrane component, teichoic acid transport
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14245..15369)
DNA (1125bp) protein (375aa)
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T365_9FIRM
Putative polyribitolphosphotransferase
Putative polyribitolphosphotransferase {ECO:0000313|EMBL:CCO04261.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15369..16205)
DNA (837bp) protein (279aa)
Glycosyltransferase Family 2 protein (EC:2.4.1.-)
Putative amylovoran biosynthesis glycosyltransferase AmsE n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFI5_9FIRM
Putative amylovoran biosynthesis glycosyltransferase AmsE {ECO:0000313|EMBL:CDC66636.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1353_15
unknown

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comp(16450..16545)
DNA (96bp) protein (32aa)

This feature has no annotations

L2_013_000G1_scaffold_1353_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16599..17555)
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HDT8_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04259.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17797..18162)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U758_9FIRM
putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:CCO04258.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18178..18900)
DNA (723bp) protein (241aa)
Cupin domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZM3_9FIRM
Cupin domain protein {ECO:0000313|EMBL:CDC66638.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_013_000G1_scaffold_1353_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19148..19882
DNA (735bp) protein (245aa)
vanY2; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAD2_9FIRM
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CDC66639.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1353_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20049..20894)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T370_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66640.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Transcriptional regulator, LysR family
L2_013_000G1_scaffold_1353_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21121..21552
DNA (432bp) protein (144aa)
Transcriptional regulator MarR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFI9_9FIRM
Putative transcriptional regulator, marR family
Putative transcriptional regulator, marR family {ECO:0000313|EMBL:CCO04254.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21578..23335
DNA (1758bp) protein (586aa)
ABC transporter permease/ATP-binding protein (EC:3.6.3.-)
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:CCO04253.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO04253.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U763_9FIRM
L2_013_000G1_scaffold_1353_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23336..25249
DNA (1914bp) protein (638aa)
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:CCO04252.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO04252.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC transporter permease/ATP-binding protein (EC:3.6.3.-)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZM8_9FIRM
L2_013_000G1_scaffold_1353_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25351..25620)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAD6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04251.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25679..28462)
DNA (2784bp) protein (928aa)
Fibronectin type III domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T376_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO04250.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein predicted by Glimmer/Critica
L2_013_000G1_scaffold_1353_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28668..29477)
DNA (810bp) protein (270aa)
Electron transport complex RnfABCDGE type B subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFJ3_9FIRM
rnfB; Electron transport complex protein RnfB
Electron transport complex protein RnfB {ECO:0000313|EMBL:CCO04249.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1353_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29500..29667)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U767_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66647.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
Displaying 27 items

View Taxonomy