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L2_013_000G1_scaffold_1407

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1407_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(227..3682)
DNA (3456bp) protein (1152aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
mfd; Transcription-repair coupling factor (superfamily II helicase) (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG39_9FIRM
L2_013_000G1_scaffold_1407_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3710..4333)
DNA (624bp) protein (208aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pth; Peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7P9_9FIRM
L2_013_000G1_scaffold_1407_3
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4501..4866)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI00037A02A3
Uncharacterized protein {ECO:0000313|EMBL:EWM52790.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L2_013_000G1_scaffold_1407_4
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4917..5393)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7ABN2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55755.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L2_013_000G1_scaffold_1407_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5479..5694
DNA (216bp) protein (72aa)
Helix-turn-helix n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAW2_9FIRM
Putative HTH-type transcriptional regulator
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:CCO03872.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5742..7169)
DNA (1428bp) protein (476aa)
glmU; Bifunctional protein GlmU (EC:2.7.7.23)
Bifunctional protein GlmU n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3R0_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7395..8213
DNA (819bp) protein (273aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG45_9FIRM
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCO03870.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8227..8721
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7Q6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03869.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8923..9921)
DNA (999bp) protein (333aa)
Glycosidase related protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T059_9FIRM
Glycoside Hydrolase Family 130 protein
Glycosidase related protein {ECO:0000313|EMBL:CDC66843.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1407_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10531..11808
DNA (1278bp) protein (426aa)
Putative transcriptional regulator GntR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAW6_9FIRM
HTH-type transcriptional regulator
HTH-type transcriptional regulator {ECO:0000313|EMBL:CCO03867.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11965..12828)
DNA (864bp) protein (288aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3R4_9FIRM
Binding-protein-dependent transport system membrane component
Binding-protein-dependent transport system membrane component {ECO:0000313|EMBL:CCO03866.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12828..13796)
DNA (969bp) protein (323aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG51_9FIRM
Binding-protein-dependent transport system membrane component
Binding-protein-dependent transport system membrane component {ECO:0000313|EMBL:CCO03865.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13870..15237)
DNA (1368bp) protein (456aa)
Extracellular solute-binding protein family 1 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7R3_9FIRM
ABC transporter extracellular-binding protein
ABC transporter extracellular-binding protein {ECO:0000313|EMBL:CCO03864.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15640..16644)
DNA (1005bp) protein (335aa)
Sugar-binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T065_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:CDC66848.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
transcriptional regulator, LacI family
L2_013_000G1_scaffold_1407_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16774..17412)
DNA (639bp) protein (213aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAX1_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDC66849.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L2_013_000G1_scaffold_1407_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17662..18888
DNA (1227bp) protein (409aa)
SpoIVB peptidase (EC:3.4.21.116)
SpoIVB peptidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3R8_9FIRM
SpoIVB peptidase {ECO:0000313|EMBL:CDC66850.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1407_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19159..19941
DNA (783bp) protein (261aa)
Putative sporulation transcription factor Spo0A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG56_9FIRM
spo0A; Stage 0 sporulation protein A homolog
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937, ECO:0000313|EMBL:CCO03860.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20192..21688)
DNA (1497bp) protein (499aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7S0_9FIRM
Sugar transferase
Sugar transferase {ECO:0000313|EMBL:CCO03859.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21889..22743
DNA (855bp) protein (285aa)
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Methylenetetrahydrofolate reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T074_9FIRM
L2_013_000G1_scaffold_1407_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23008..24282)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3S3_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03857.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1407_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24298..26139)
DNA (1842bp) protein (614aa)
Secretion protein HlyD family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO03856.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
conserved hypothetical protein
L2_013_000G1_scaffold_1407_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26136..26822)
DNA (687bp) protein (229aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter ATPase component {ECO:0000313|EMBL:CCO03855.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO03855.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC transporter related protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7S7_9FIRM
L2_013_000G1_scaffold_1407_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26835..28280)
DNA (1446bp) protein (482aa)
Efflux transporter RND family MFP subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T079_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03854.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying 23 items

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