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L2_013_000G1_scaffold_1442

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_000G1_scaffold_1442_1
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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50..1624
DNA (1575bp) protein (525aa)
Transposase, IS4 family n=1 Tax=Clostridium sp. SS2/1 RepID=B0NYR2_9CLOT
Transposase, IS4 family {ECO:0000313|EMBL:EDS22583.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
transposase IS4 family protein
L2_013_000G1_scaffold_1442_2
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1813..2238)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2F7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82800.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
SUF system FeS assembly protein, NifU family
L2_013_000G1_scaffold_1442_3
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2228..3439)
DNA (1212bp) protein (404aa)
Cysteine desulfurase {ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|SAAS:SAAS00062216};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
cysteine desulfurase (EC:2.8.1.7 4.4.1.16)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2B5_9FIRM
L2_013_000G1_scaffold_1442_4
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3445..4377)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4A8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82798.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L2_013_000G1_scaffold_1442_5
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4397..5806)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L6G3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82797.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Iron-regulated ABC transporter membrane component SufB
L2_013_000G1_scaffold_1442_6
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

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comp(5862..6626)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZFS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD47268.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
Iron-regulated ABC transporter ATPase subunit SufC
L2_013_000G1_scaffold_1442_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6886..7209
DNA (324bp) protein (108aa)
Transcriptional regulator, PadR family n=2 Tax=Ruminococcus RepID=E9SFF4_RUMAL
Transcriptional regulator, PadR-like family
Transcriptional regulator PadR family {ECO:0000313|EMBL:CDC67062.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1442_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7206..7835
DNA (630bp) protein (210aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0W4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05606.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1442_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7835..8659
DNA (825bp) protein (275aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBK9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05607.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1442_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8672..8854
DNA (183bp) protein (61aa)
Phage shock protein C PspC n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4G1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05608.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1442_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9084..9317
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGT5_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05609.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1442_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9314..9511
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8H4_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05610.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1442_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9498..10367
DNA (870bp) protein (290aa)
Glycosyl hydrolase family 25 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0W6_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:CDC67068.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Glycoside Hydrolase Family 25 protein
L2_013_000G1_scaffold_1442_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10502..10843)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBL3_9FIRM
rplQ; ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1442_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10862..11821)
DNA (960bp) protein (320aa)
rpoA; DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:CCO05613.1};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4G5_9FIRM
L2_013_000G1_scaffold_1442_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11953..12549)
DNA (597bp) protein (199aa)
30S ribosomal protein S4 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGU0_9FIRM
rpsD; ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1442_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12642..13040)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8H8_9FIRM
rpsK; ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1442_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13055..13423)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0X1_9FIRM
rpsM; ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1442_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13627..13845)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4G8_9FIRM
infA; Translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1442_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13845..14144)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGU4_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05619.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1442_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14141..14887)
DNA (747bp) protein (249aa)
pepM; Methionine Aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CCO05620.1};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Methionine aminopeptidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8I1_9FIRM
L2_013_000G1_scaffold_1442_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14904..15536)
DNA (633bp) protein (211aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Adenylate kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0X4_9FIRM
L2_013_000G1_scaffold_1442_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15575..16870)
DNA (1296bp) protein (432aa)
Protein translocase subunit SecY n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBM1_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
secY; Preprotein translocase subunit SecY
L2_013_000G1_scaffold_1442_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16873..17313)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4H4_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
rplO; ribosomal protein L15
L2_013_000G1_scaffold_1442_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17329..17505)
DNA (177bp) protein (59aa)
50S ribosomal protein L30 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGU8_9FIRM
rpmD; ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1442_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17520..18020)
DNA (501bp) protein (167aa)
30S ribosomal protein S5 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8I3_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
rpsE; ribosomal protein S5
L2_013_000G1_scaffold_1442_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18036..18395)
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0X7_9FIRM
rplR; ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1442_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18414..18965)
DNA (552bp) protein (184aa)
50S ribosomal protein L6 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBM4_9FIRM
rplF; ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_000G1_scaffold_1442_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18979..19377)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4H6_9FIRM
rpsH; ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_000G1_scaffold_1442_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19394..19579)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGV2_9FIRM
rpsN; ribosomal protein S14 type Z
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Displaying items 1-30 of 45 in total

View Taxonomy