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L2_013_033G1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_033G1_scaffold_56_1
unknown

Not on your lists

1..102
DNA (102bp) protein (34aa)

This feature has no annotations

L2_013_033G1_scaffold_56_2
Gardnerella vaginalis, Gardnerella, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(604..1296)
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Gardnerella vaginalis RepID=S4GFW0_GARVA
Uncharacterized protein {ECO:0000313|EMBL:EPI47239.1}; TaxID=1261066 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source="Gardnerella vaginalis JCP8108.;"
hypothetical protein
L2_013_033G1_scaffold_56_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1593..2210
DNA (618bp) protein (206aa)
UPI0003D5B953 related cluster n=1 Tax=unknown RepID=UPI0003D5B953
Uncharacterized protein {ECO:0000313|EMBL:ETI82040.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_033G1_scaffold_56_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2656..3810
DNA (1155bp) protein (385aa)
UPI0003D5B652 related cluster n=1 Tax=unknown RepID=UPI0003D5B652
Uncharacterized protein {ECO:0000313|EMBL:ETI82041.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
periplasmic binding protein and sugar binding domain of the LacI family protein
L2_013_033G1_scaffold_56_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3807..5342
DNA (1536bp) protein (512aa)
UPI0003D5F7DC related cluster n=1 Tax=unknown RepID=UPI0003D5F7DC
Uncharacterized protein {ECO:0000313|EMBL:ETI82042.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative ribose transport, ATP-binding protein RbsA
L2_013_033G1_scaffold_56_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5335..6297
DNA (963bp) protein (321aa)
UPI0003D5B57C related cluster n=1 Tax=unknown RepID=UPI0003D5B57C
Uncharacterized protein {ECO:0000313|EMBL:ETI82043.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
branched-chain amino acid ABC transporter permease
L2_013_033G1_scaffold_56_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6354..8405
DNA (2052bp) protein (684aa)
UPI0003D6233D related cluster n=1 Tax=unknown RepID=UPI0003D6233D
Uncharacterized protein {ECO:0000313|EMBL:ETI82044.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
beta-galactosidase
L2_013_033G1_scaffold_56_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8417..9196
DNA (780bp) protein (260aa)
UPI0003D5DF24 related cluster n=1 Tax=unknown RepID=UPI0003D5DF24
Uncharacterized protein {ECO:0000313|EMBL:ETI82045.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_033G1_scaffold_56_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9298..10404)
DNA (1107bp) protein (369aa)
UPI0003D661CE related cluster n=1 Tax=unknown RepID=UPI0003D661CE
Transcriptional regulator {ECO:0000313|EMBL:ETI82046.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative LacI transcriptional repressor
L2_013_033G1_scaffold_56_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10575..12644
DNA (2070bp) protein (690aa)
UPI0003D69829 related cluster n=1 Tax=unknown RepID=UPI0003D69829
Uncharacterized protein {ECO:0000313|EMBL:ETI82047.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
choline transporter BetT
L2_013_033G1_scaffold_56_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12834..13202
DNA (369bp) protein (123aa)
UPI0003D5D67F related cluster n=1 Tax=unknown RepID=UPI0003D5D67F
Pyridoxamine 5'-phosphate oxidase-like protein {ECO:0000313|EMBL:ETI82048.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pyridoxamine 5'-phosphate oxidase-like protein
L2_013_033G1_scaffold_56_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13249..15501)
DNA (2253bp) protein (751aa)
UPI0003D5FEE7 related cluster n=1 Tax=unknown RepID=UPI0003D5FEE7
Uncharacterized protein {ECO:0000313|EMBL:ETI82049.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
heavy metal translocating P-type ATPase
L2_013_033G1_scaffold_56_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15861..18308)
DNA (2448bp) protein (816aa)
UPI0003D5CEB3 related cluster n=1 Tax=unknown RepID=UPI0003D5CEB3
Uncharacterized protein {ECO:0000313|EMBL:ETI82050.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_033G1_scaffold_56_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18330..18941)
DNA (612bp) protein (204aa)
dhaL; dihydroxyacetone kinase, L subunit (EC:2.7.1.-)
UPI0003D64B66 related cluster n=1 Tax=unknown RepID=UPI0003D64B66
Dihydroxyacetone kinase, L subunit {ECO:0000313|EMBL:ETI82051.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_013_033G1_scaffold_56_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18944..19945)
DNA (1002bp) protein (334aa)
dhaK; DhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit (EC:2.7.1.-)
UPI0003D5CA02 related cluster n=1 Tax=unknown RepID=UPI0003D5CA02
Uncharacterized protein {ECO:0000313|EMBL:ETI82052.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_013_033G1_scaffold_56_16
Arcanobacterium haemolyticum, Arcanobacterium, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20013..22166)
DNA (2154bp) protein (718aa)
Acyltransferase 3 n=1 Tax=Arcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC 15585 / NCTC 8452 / 11018) RepID=D7BK22_ARCHD
acyltransferase 3
Acyltransferase 3 {ECO:0000313|EMBL:ADH93002.1}; TaxID=644284 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Arcanobacterium.;" source="Arcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC; 15585 / NCTC 8452 / 11018).;"
L2_013_033G1_scaffold_56_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22412..23830)
DNA (1419bp) protein (473aa)
UPI0003D6570C related cluster n=1 Tax=unknown RepID=UPI0003D6570C
Uncharacterized protein {ECO:0000313|EMBL:ETI82053.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
membrane protein
L2_013_033G1_scaffold_56_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23843..24616)
DNA (774bp) protein (258aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
UPI0003D66324 related cluster n=1 Tax=unknown RepID=UPI0003D66324
L2_013_033G1_scaffold_56_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24634..25149)
DNA (516bp) protein (172aa)
UPI0003D60202 related cluster n=1 Tax=unknown RepID=UPI0003D60202
Transcriptional regulator, CarD family {ECO:0000313|EMBL:ETI82055.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_033G1_scaffold_56_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25341..26474)
DNA (1134bp) protein (378aa)
UPI0003D5EC35 related cluster n=1 Tax=unknown RepID=UPI0003D5EC35
Metallophosphoesterase {ECO:0000313|EMBL:ETI82056.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
metallophosphoesterase
L2_013_033G1_scaffold_56_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26478..28685)
DNA (2208bp) protein (736aa)
UPI0003D617ED related cluster n=1 Tax=unknown RepID=UPI0003D617ED
Uncharacterized protein {ECO:0000313|EMBL:ETI82057.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative penicillin-binding protein
L2_013_033G1_scaffold_56_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28872..29201
DNA (330bp) protein (110aa)
transcriptional regulator n=2 Tax=Varibaculum cambriense RepID=UPI0003B4E422
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
transcription factor WhiB
L2_013_033G1_scaffold_56_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29428..29862
DNA (435bp) protein (145aa)
UPI0003D64786 related cluster n=1 Tax=unknown RepID=UPI0003D64786
Endoribonuclease L-PSP family protein {ECO:0000313|EMBL:ETI82059.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
LysR family transcriptional regulator
L2_013_033G1_scaffold_56_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29873..30223)
DNA (351bp) protein (117aa)
UPI0003D5C426 related cluster n=1 Tax=unknown RepID=UPI0003D5C426
Uncharacterized protein {ECO:0000313|EMBL:ETI82060.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_013_033G1_scaffold_56_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30224..31717)
DNA (1494bp) protein (498aa)
UPI0003D5B5F1 related cluster n=1 Tax=unknown RepID=UPI0003D5B5F1
Uncharacterized protein {ECO:0000313|EMBL:ETI82061.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
major facilitator superfamily protein
L2_013_033G1_scaffold_56_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31810..32175
DNA (366bp) protein (122aa)
UPI0003D699BA related cluster n=1 Tax=unknown RepID=UPI0003D699BA
Uncharacterized protein {ECO:0000313|EMBL:ETI82062.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_033G1_scaffold_56_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32322..32996
DNA (675bp) protein (225aa)
UPI0003D67F34 related cluster n=1 Tax=unknown RepID=UPI0003D67F34
Uncharacterized protein {ECO:0000313|EMBL:ETI82063.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_033G1_scaffold_56_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32998..33279
DNA (282bp) protein (94aa)
UPI0003D5986B related cluster n=1 Tax=unknown RepID=UPI0003D5986B
Uncharacterized protein {ECO:0000313|EMBL:ETI82064.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_013_033G1_scaffold_56_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33459..33659
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B5F6C4
Uncharacterized protein {ECO:0000313|EMBL:ETI82065.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_033G1_scaffold_56_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33739..36294)
DNA (2556bp) protein (852aa)
UPI0003D61058 related cluster n=1 Tax=unknown RepID=UPI0003D61058
Uncharacterized protein {ECO:0000313|EMBL:ETI82066.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
Displaying items 1-30 of 95 in total

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