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L2_013_043G1_scaffold_1

Search features with annotation key words

Displaying items 1-30 of 385 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_043G1_scaffold_1_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..162)
DNA (162bp) protein (54aa)
rbr3A; reverse rubrerythrin-1 (EC:1.11.1.1)
Reverse rubrerythrin-1 {ECO:0000313|EMBL:AIY84692.1}; EC=1.11.1.1 {ECO:0000313|EMBL:AIY84692.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Putative Rubredoxin/rubrerythrin n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F7R9_9CLOT
L2_013_043G1_scaffold_1_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(588..950)
DNA (363bp) protein (121aa)
membrane protein n=1 Tax=Clostridium botulinum RepID=UPI000360B8E9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83004.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1069..1611)
DNA (543bp) protein (181aa)
rbr3A; reverse rubrerythrin-1 (EC:1.11.1.1)
Reverse rubrerythrin-1 {ECO:0000313|EMBL:AIY84629.1}; EC=1.11.1.1 {ECO:0000313|EMBL:AIY84629.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Reverse rubrerythrin-1 n=1 Tax=Clostridium colicanis 209318 RepID=N9WID4_9CLOT
L2_013_043G1_scaffold_1_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1755..2654)
DNA (900bp) protein (300aa)
HTH domain protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7TDT6_CLOSG
transcriptional regulator family protein
Transcriptional regulator family protein {ECO:0000313|EMBL:AIY84926.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3233..3658)
DNA (426bp) protein (142aa)
MarR family protein n=1 Tax=Clostridium difficile CD160 RepID=T3D999_CLODI
marR family protein
MarR family protein {ECO:0000313|EMBL:AIY83638.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3724..5145)
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Bacillus sp. AP8 RepID=UPI0002E04C97
drug resistance MFS transporter, drug:H+ antiporter-2 family protein
Drug resistance MFS transporter, drug:H+ antiporter-2 family protein {ECO:0000313|EMBL:AIY84604.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5354..5605)
DNA (252bp) protein (84aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84644.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5620..6204)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BJI3_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83489.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6485..6712)
DNA (228bp) protein (76aa)
Uncharacterized protein n=7 Tax=Clostridium perfringens RepID=B1BEN3_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83095.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6964..7557)
DNA (594bp) protein (198aa)
Putative 30S ribosomal protein S4 B n=6 Tax=Clostridium perfringens RepID=RS4B_CLOPE
rpsD; ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7836..8834)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WAB0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJU72026.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
L2_013_043G1_scaffold_1_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9046..9600)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI00028925AF
Uncharacterized protein {ECO:0000313|EMBL:KJU72027.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
L2_013_043G1_scaffold_1_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9705..10361)
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=3 Tax=Clostridium botulinum RepID=F4A838_CLOBO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82321.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10483..11709)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGZ8_9CLOT
fliB family protein
FliB family protein {ECO:0000313|EMBL:KJU72028.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L2_013_043G1_scaffold_1_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11792..13264)
DNA (1473bp) protein (491aa)
UPF0061 protein IYC_02124 n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9EW23_CLOSG
UPF0061 protein UC77_04705 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
L2_013_043G1_scaffold_1_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13526..13984)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036F9123
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83200.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_17
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14215..15258)
DNA (1044bp) protein (348aa)
D-galactose-binding periplasmic protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M1Q7_CLOB8
periplasmic binding domain protein
Periplasmic binding domain protein {ECO:0000313|EMBL:AIY82442.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15292..16269)
DNA (978bp) protein (326aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium sp. DL-VIII RepID=G7LY63_9CLOT
periplasmic binding s and sugar binding domain of LacI family protein
Periplasmic binding s and sugar binding domain of LacI family protein {ECO:0000313|EMBL:AIY83606.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16260..18134)
DNA (1875bp) protein (625aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H8H5_9CLOT
HAMP domain protein
L2_013_043G1_scaffold_1_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18082..19686)
DNA (1605bp) protein (535aa)
Response regulator receiver protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MQF5_9CLOT
Helix-turn-helix domain protein {ECO:0000313|EMBL:AIY83751.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
helix-turn-helix domain protein
L2_013_043G1_scaffold_1_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19974..20771
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FQA5_9CLOT
putative transposase
Putative transposase {ECO:0000313|EMBL:AIY84991.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21072..21257)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QCK7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83058.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21273..22295)
DNA (1023bp) protein (341aa)
Beta-methylgalactoside transporter inner membrane component n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CE88_9CLOT
Beta-methylgalactoside transporter {ECO:0000313|EMBL:KJU72035.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
branched-chain amino acid transport system / permease component family protein
L2_013_043G1_scaffold_1_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22312..23811)
DNA (1500bp) protein (500aa)
Galactose/methyl galactoside import ATP-binding protein MglA {ECO:0000256|HAMAP-Rule:MF_01717}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01717};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H414_9CLOT
ABC transporter family protein
L2_013_043G1_scaffold_1_25
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23916..24956)
DNA (1041bp) protein (347aa)
Putative ABC-type sugar transport system,periplasmic component n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FMU0_9CLOT
periplasmic binding s and sugar binding domain of LacI family protein
Periplasmic binding s and sugar binding domain of LacI family protein {ECO:0000313|EMBL:AIY83109.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25221..26405
DNA (1185bp) protein (395aa)
galK; galactokinase (EC:2.7.1.6)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Galactokinase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KIC3_9CLOT
L2_013_043G1_scaffold_1_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26417..27406
DNA (990bp) protein (330aa)
galE; UDP-glucose 4-epimerase GalE (EC:5.1.3.2)
UDP-glucose 4-epimerase GalE {ECO:0000313|EMBL:AIY83547.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AIY83547.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
UDP-glucose-4-epimerase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U726_9CLOT
L2_013_043G1_scaffold_1_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27419..28912
DNA (1494bp) protein (498aa)
galT; galactose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571, ECO:0000313|EMBL:AIY84519.1}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571, ECO:0000313|EMBL:AIY84519.1};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Galactose-1-phosphate uridylyltransferase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G5D3_CLOPA
L2_013_043G1_scaffold_1_29
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28926..29942
DNA (1017bp) protein (339aa)
Catabolite control protein A n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MMV4_CLOSA
helix-turn-helix family protein
Helix-turn-helix family protein {ECO:0000313|EMBL:AIY84439.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_013_043G1_scaffold_1_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30059..30238)
DNA (180bp) protein (60aa)
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AIY82349.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Displaying items 1-30 of 385 in total

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