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L2_013_043G1_scaffold_111

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_043G1_scaffold_111_1
unknown

Not on your lists

comp(2..67)
DNA (66bp) protein (22aa)

This feature has no annotations

L2_013_043G1_scaffold_111_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

276..1088
DNA (813bp) protein (271aa)
UPI0003D62975 related cluster n=1 Tax=unknown RepID=UPI0003D62975
Uncharacterized protein {ECO:0000313|EMBL:ETI82715.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Hypothetical protein
L2_013_043G1_scaffold_111_3
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1105..1260)
DNA (156bp) protein (52aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
XRE family transcriptional regulator n=1 Tax=Varibaculum cambriense RepID=UPI0003B63CFF
Putative DNA-directed DNA polymerase {ECO:0000313|EMBL:EFU80550.1}; TaxID=887326 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii ATCC 51333.;"
L2_013_043G1_scaffold_111_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2068..3171
DNA (1104bp) protein (368aa)
tryptophanyl-tRNA synthetase n=1 Tax=Varibaculum cambriense RepID=UPI0003B32F82
Uncharacterized protein {ECO:0000313|EMBL:ETI82714.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
tryptophanyl-tRNA synthetase
L2_013_043G1_scaffold_111_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3176..3841
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B500B3
Protein SanA {ECO:0000313|EMBL:ETI82713.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_043G1_scaffold_111_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3976..6273
DNA (2298bp) protein (766aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=1 Tax=Varibaculum cambriense RepID=UPI0003B52BE5
alpha amylase catalytic region
L2_013_043G1_scaffold_111_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6300..8204
DNA (1905bp) protein (635aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
trehalose synthase n=1 Tax=Varibaculum cambriense RepID=UPI0003B7ACE2
trehalose synthase
L2_013_043G1_scaffold_111_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8194..9531
DNA (1338bp) protein (446aa)
1,4-alpha-glucan branching protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B33C9D
Uncharacterized protein {ECO:0000313|EMBL:ETI82710.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_043G1_scaffold_111_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9649..14829
DNA (5181bp) protein (1727aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B6F1E5
Uncharacterized protein {ECO:0000313|EMBL:ETI82709.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
metallophosphoesterase
L2_013_043G1_scaffold_111_10
unknown

Not on your lists

14896..15663
DNA (768bp) protein (256aa)

This feature has no annotations

L2_013_043G1_scaffold_111_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15804..17315)
DNA (1512bp) protein (504aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B62C14
Uncharacterized protein {ECO:0000313|EMBL:ETI82708.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
PucR family transcriptional regulator
L2_013_043G1_scaffold_111_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17515..18771
DNA (1257bp) protein (419aa)
glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.3)
UPI0003D664E6 related cluster n=1 Tax=unknown RepID=UPI0003D664E6
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_013_043G1_scaffold_111_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18913..21096
DNA (2184bp) protein (728aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
glgB; 1,4-alpha-glucan branching protein (EC:2.4.1.18)
1,4-alpha-glucan branching protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B69AF7
L2_013_043G1_scaffold_111_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21266..22531)
DNA (1266bp) protein (422aa)
UPI0003D5B63D related cluster n=1 Tax=unknown RepID=UPI0003D5B63D
Uncharacterized protein {ECO:0000313|EMBL:ETI82704.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
manganese transporter
L2_013_043G1_scaffold_111_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22710..23195)
DNA (486bp) protein (162aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D5A3C2 related cluster n=1 Tax=unknown RepID=UPI0003D5A3C2
transcriptional regulator
L2_013_043G1_scaffold_111_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23413..24351
DNA (939bp) protein (313aa)
ABC transporter ATP-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B44D60
Uncharacterized protein {ECO:0000313|EMBL:ETI82702.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
antibiotic ABC transporter ATP-binding protein
L2_013_043G1_scaffold_111_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24354..25613
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B46C35
ABC-2 type transporter {ECO:0000313|EMBL:ETI82701.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_043G1_scaffold_111_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25600..26748
DNA (1149bp) protein (383aa)
UPI0003D6006B related cluster n=1 Tax=unknown RepID=UPI0003D6006B
Uncharacterized protein {ECO:0000313|EMBL:ETI82700.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_043G1_scaffold_111_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26941..27561)
DNA (621bp) protein (207aa)
UPI0003D5E3E7 related cluster n=1 Tax=unknown RepID=UPI0003D5E3E7
Cadmium binding protein {ECO:0000313|EMBL:ETI82699.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
cadmium binding protein
L2_013_043G1_scaffold_111_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27590..27919
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B361F2
ACT protein {ECO:0000313|EMBL:ETI82698.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ACT domain-containing protein
L2_013_043G1_scaffold_111_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27969..29333
DNA (1365bp) protein (455aa)
UPI0003D6229C related cluster n=1 Tax=unknown RepID=UPI0003D6229C
UPF0210 protein Q618_VCMC00001G0278 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_043G1_scaffold_111_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29488..30873)
DNA (1386bp) protein (462aa)
cellulose-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B3B090
Uncharacterized protein {ECO:0000313|EMBL:ETI82696.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
cellulose-binding protein
L2_013_043G1_scaffold_111_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31170..32546
DNA (1377bp) protein (459aa)
UPI0003D5E023 related cluster n=1 Tax=unknown RepID=UPI0003D5E023
Uncharacterized protein {ECO:0000313|EMBL:ETI82695.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_043G1_scaffold_111_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32543..33550
DNA (1008bp) protein (336aa)
UPI0003D61B69 related cluster n=1 Tax=unknown RepID=UPI0003D61B69
Uncharacterized protein {ECO:0000313|EMBL:ETI82694.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_013_043G1_scaffold_111_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33563..34489
DNA (927bp) protein (309aa)
UPI0003D59BA6 related cluster n=1 Tax=unknown RepID=UPI0003D59BA6
Uncharacterized protein {ECO:0000313|EMBL:ETI82693.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
thioredoxin domain-containing protein
L2_013_043G1_scaffold_111_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34565..35866
DNA (1302bp) protein (434aa)
galK; galactokinase (EC:2.7.1.6)
UPI0003D652E0 related cluster n=1 Tax=unknown RepID=UPI0003D652E0
Galactokinase {ECO:0000256|SAAS:SAAS00025843}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_013_043G1_scaffold_111_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35993..37585)
DNA (1593bp) protein (531aa)
UPI0003D6485E related cluster n=1 Tax=unknown RepID=UPI0003D6485E
Uncharacterized protein {ECO:0000313|EMBL:ETI82691.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
transporter, major facilitator family protein
L2_013_043G1_scaffold_111_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37606..40671)
DNA (3066bp) protein (1022aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
lacZ; beta-galactosidase (EC:3.2.1.23)
UPI0003D686F0 related cluster n=1 Tax=unknown RepID=UPI0003D686F0
L2_013_043G1_scaffold_111_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40819..41838
DNA (1020bp) protein (340aa)
UPI0003D693D7 related cluster n=1 Tax=unknown RepID=UPI0003D693D7
Uncharacterized protein {ECO:0000313|EMBL:ETI82689.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative LacI transcriptional repressor
L2_013_043G1_scaffold_111_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41744..41959)
DNA (216bp) protein (72aa)
UPI0003D650D0 related cluster n=1 Tax=unknown RepID=UPI0003D650D0
Uncharacterized protein {ECO:0000313|EMBL:ETI82688.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Displaying items 1-30 of 54 in total

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