ggKbase home page

L2_013_043G1_scaffold_279

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_043G1_scaffold_279_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(84..440)
DNA (357bp) protein (119aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=H7CYL8_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA16200.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_013_043G1_scaffold_279_2
unknown

Not on your lists

comp(416..571)
DNA (156bp) protein (52aa)

This feature has no annotations

L2_013_043G1_scaffold_279_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1124..2302)
DNA (1179bp) protein (393aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Putative acyltransferase {ECO:0000313|EMBL:EIA16201.1}; EC=2.3.1.9 {ECO:0000313|EMBL:EIA16201.1};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Acetyl-CoA acetyltransferase n=5 Tax=Clostridium perfringens RepID=Q0TNB6_CLOP1
L2_013_043G1_scaffold_279_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2570..3724)
DNA (1155bp) protein (385aa)
mnaA; UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EDT23965.1}; EC=5.1.3.14 {ECO:0000313|EMBL:EDT23965.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
UDP-N-acetylglucosamine 2-epimerase n=8 Tax=Clostridium perfringens RepID=H7CYM0_CLOPF
L2_013_043G1_scaffold_279_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3788..4417)
DNA (630bp) protein (210aa)
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Uracil phosphoribosyltransferase n=10 Tax=Clostridium perfringens RepID=UPP_CLOP1
L2_013_043G1_scaffold_279_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4462..4911)
DNA (450bp) protein (150aa)
rpiB; ribose-5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=8 Tax=Clostridium perfringens RepID=H7CYM2_CLOPF
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:BAB81904.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_013_043G1_scaffold_279_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5176..6228)
DNA (1053bp) protein (351aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Sua5/YciO/YrdC/YwlC family protein n=2 Tax=Clostridium perfringens RepID=Q0TNB2_CLOP1
Sua5/YciO/YrdC/YwlC family protein
L2_013_043G1_scaffold_279_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6251..6841)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SQY2_CLOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG86001.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L2_013_043G1_scaffold_279_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6920..8002)
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 n=11 Tax=Clostridium perfringens RepID=RF1_CLOP1
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_013_043G1_scaffold_279_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8059..9822)
DNA (1764bp) protein (588aa)
Protein-(Glutamine-N5) methyltransferase, release factor-specific n=2 Tax=Clostridium perfringens RepID=Q0TNA9_CLOP1
Methyltransferase, HemK family {ECO:0000313|EMBL:EDT23998.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
HemK family methyltransferase
L2_013_043G1_scaffold_279_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9848..10447)
DNA (600bp) protein (200aa)
tdk; thymidine kinase (EC:2.7.1.21)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Thymidine kinase n=8 Tax=Clostridium perfringens RepID=H7CYM8_CLOPF
L2_013_043G1_scaffold_279_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10603..10809
DNA (207bp) protein (69aa)
50S ribosomal protein L31 n=10 Tax=Clostridium perfringens RepID=RL31_CLOP1
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_013_043G1_scaffold_279_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10915..12042
DNA (1128bp) protein (376aa)
Putative monogalactosyldiacylglycerol synthase n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BRS2_CLOPF
Putative monogalactosyldiacylglycerol synthase {ECO:0000313|EMBL:EDT15558.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
monogalactosyldiacylglycerol synthase
L2_013_043G1_scaffold_279_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12085..13545)
DNA (1461bp) protein (487aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Transcription termination factor Rho n=8 Tax=Clostridium perfringens RepID=H7CYN1_CLOPF
rho; transcription termination factor Rho
L2_013_043G1_scaffold_279_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13809..15416)
DNA (1608bp) protein (536aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
CTP synthase n=8 Tax=Clostridium perfringens RepID=PYRG_CLOP1
L2_013_043G1_scaffold_279_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15757..16176)
DNA (420bp) protein (140aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CYN3_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT15544.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_013_043G1_scaffold_279_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16199..17179)
DNA (981bp) protein (327aa)
Thiamin biosynthesis protein ThiI n=3 Tax=Clostridium perfringens RepID=B1BK85_CLOPF
Thiamin biosynthesis protein ThiI {ECO:0000313|EMBL:EDT70966.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
thiamin biosynthesis protein ThiI
L2_013_043G1_scaffold_279_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17225..17854)
DNA (630bp) protein (210aa)
Stage II sporulation protein R n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLZ6_CLOPF
Stage II sporulation protein R {ECO:0000313|EMBL:EDT70969.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
spoIIR; stage II sporulation protein R
L2_013_043G1_scaffold_279_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17923..18789)
DNA (867bp) protein (289aa)
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=6 Tax=Clostridium perfringens RepID=ISPE_CLOP1
L2_013_043G1_scaffold_279_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18925..21549)
DNA (2625bp) protein (875aa)
Cyanophycin synthetase {ECO:0000313|EMBL:EDT23935.1}; EC=6.-.-.- {ECO:0000313|EMBL:EDT23935.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
cphA; cyanophycin synthetase (EC:6.-.-.-)
Cyanophycin synthetase n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CTJ5_CLOPF
L2_013_043G1_scaffold_279_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21536..22402)
DNA (867bp) protein (289aa)
cphB; cyanophycinase (EC:3.-.-.-)
Cyanophycinase {ECO:0000313|EMBL:EDT23934.1}; EC=3.-.-.- {ECO:0000313|EMBL:EDT23934.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Cyanophycinase n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TN98_CLOP1
L2_013_043G1_scaffold_279_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22463..23734)
DNA (1272bp) protein (424aa)
LysM domain protein n=4 Tax=Clostridium perfringens RepID=Q0TN97_CLOP1
lysM domain-containing protein
LysM domain protein {ECO:0000313|EMBL:EDT15580.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Displaying 22 items

View Taxonomy