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L2_013_122G1_scaffold_1333

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_1333_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..589
DNA (588bp) protein (196aa)
Response regulator of two-component system n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3V8_BIFLO
response regulator of two-component system
Transcriptional regulator {ECO:0000313|EMBL:KEY21487.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L2_013_122G1_scaffold_1333_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(637..1659)
DNA (1023bp) protein (341aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KFI73669.1}; EC=5.1.3.2 {ECO:0000313|EMBL:KFI73669.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
GalE1 n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MX85_9BIFI
UDP-glucose 4-epimerase
L2_013_122G1_scaffold_1333_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1728..3275)
DNA (1548bp) protein (516aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
galT2; galactose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3W0_BIFLO
L2_013_122G1_scaffold_1333_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3322..4401)
DNA (1080bp) protein (360aa)
Aminoglycoside phosphotransferase n=2 Tax=Bifidobacterium longum RepID=D6ZW60_BIFLJ
aminoglycoside phosphotransferase
Desulfatase {ECO:0000313|EMBL:KFI73667.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L2_013_122G1_scaffold_1333_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4430..6685)
DNA (2256bp) protein (752aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW61_BIFLJ
Uncharacterized protein {ECO:0000313|EMBL:ADH01117.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
hypothetical protein
L2_013_122G1_scaffold_1333_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6901..7851)
DNA (951bp) protein (317aa)
Permease of ABC transporter for sugars n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3W3_BIFLO
permease of ABC transporter for sugars
Permease of ABC transporter for sugars {ECO:0000313|EMBL:AAN25427.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L2_013_122G1_scaffold_1333_7
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7851..8822)
DNA (972bp) protein (324aa)
MalF-type ABC sugar transport systems permease component n=3 Tax=Bifidobacterium RepID=B3DQH0_BIFLD
MalF-type ABC sugar transport systems permease component
Binding-protein-dependent transport system inner membrane component {ECO:0000313|EMBL:EFV37795.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L2_013_122G1_scaffold_1333_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9013..9510)
DNA (498bp) protein (166aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW64_BIFLJ
family 1 extracellular solute-binding protein
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EEQ55273.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L2_013_122G1_scaffold_1333_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9449..10297)
DNA (849bp) protein (283aa)
Solute binding protein of ABC transporter for sugars n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3W5_BIFLO
solute binding protein of ABC transporter for sugars
Solute binding protein of ABC transporter for sugars {ECO:0000313|EMBL:AAN25425.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L2_013_122G1_scaffold_1333_10
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11288..12574)
DNA (1287bp) protein (429aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
Serine--tRNA ligase n=2 Tax=Bifidobacterium RepID=SYS_BIFLD
serS; seryl-tRNA synthetase
L2_013_122G1_scaffold_1333_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12808..13989
DNA (1182bp) protein (394aa)
Uncharacterized protein n=5 Tax=Bifidobacterium longum RepID=Q8G3W8_BIFLO
diacylglycerol kinase, catalytic region
Diacylglycerol kinase, catalytic region {ECO:0000313|EMBL:ADH01132.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L2_013_122G1_scaffold_1333_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14013..14873)
DNA (861bp) protein (287aa)
Transcriptional antiterminator, BglG family n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DC22_BIFLN
FruR protein {ECO:0000313|EMBL:KFI73659.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
transcription antiterminator BglG
L2_013_122G1_scaffold_1333_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14870..17245)
DNA (2376bp) protein (792aa)
PtsG n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3X0_BIFLO
PtsG {ECO:0000313|EMBL:AAN25420.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
ptsG; hypothetical protein
L2_013_122G1_scaffold_1333_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17745..19298
DNA (1554bp) protein (518aa)
D-Glucose-proton symporter n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3X1_BIFLO
glcP; D-glucose-proton symporter
D-Glucose-proton symporter {ECO:0000313|EMBL:AAN25419.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L2_013_122G1_scaffold_1333_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19385..21061
DNA (1677bp) protein (559aa)
Phosphoglucomutase {ECO:0000313|EMBL:KFI73656.1}; EC=5.4.2.2 {ECO:0000313|EMBL:KFI73656.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Phosphoglucomutase, alpha-D-glucose phosphate-specific n=6 Tax=Bifidobacterium RepID=D6DC24_BIFLN
phosphoglucomutase
L2_013_122G1_scaffold_1333_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21708..21932)
DNA (225bp) protein (75aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum RepID=B3DQG1_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ27273.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L2_013_122G1_scaffold_1333_17
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22361..22783
DNA (423bp) protein (141aa)
Transcriptional regulator, BadM/Rrf2 family n=15 Tax=Bifidobacterium RepID=D6DC26_BIFLN
transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:CCY94959.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L2_013_122G1_scaffold_1333_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22917..24551
DNA (1635bp) protein (545aa)
Class I pyridine nucleotide-disulfideoxidoreductase {ECO:0000313|EMBL:KFI68476.1}; EC=1.8.1.4 {ECO:0000313|EMBL:KFI68476.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Possible class I pyridine nucleotide-disulfideoxidoreductase n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3X6_BIFLO
class I pyridine nucleotide-disulfideoxidoreductase
L2_013_122G1_scaffold_1333_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24710..24862)
DNA (153bp) protein (51aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=I3B6Z2_BIFLN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ71842.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L2_013_122G1_scaffold_1333_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25238..26074
DNA (837bp) protein (279aa)
Ribonuclease H {ECO:0000313|EMBL:KFI68474.1}; EC=3.1.26.4 {ECO:0000313|EMBL:KFI68474.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Ribonuclease H n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW85_BIFLJ
ribonuclease H
L2_013_122G1_scaffold_1333_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26205..26903
DNA (699bp) protein (233aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
Ribose-5-phosphate isomerase A n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW86_BIFLJ
ribose 5-phosphate isomerase
L2_013_122G1_scaffold_1333_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27054..27143)
DNA (90bp) protein (30aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DQF6_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI95902.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
L2_013_122G1_scaffold_1333_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27335..27967)
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=D6ZW87_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI68471.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L2_013_122G1_scaffold_1333_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28095..29633
DNA (1539bp) protein (513aa)
DNA repair protein RadA n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW88_BIFLJ
DNA repair protein RadA
DNA repair protein RadA {ECO:0000313|EMBL:ADH01144.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L2_013_122G1_scaffold_1333_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29648..30772)
DNA (1125bp) protein (375aa)
FAD synthase (EC:2.7.7.2 2.7.1.26)
FAD synthase n=3 Tax=Bifidobacterium longum subsp. longum RepID=D6DC32_BIFLN
FAD synthase {ECO:0000313|EMBL:BAP84239.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L2_013_122G1_scaffold_1333_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30870..31235)
DNA (366bp) protein (122aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
tRNA pseudouridine synthase B n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XX93_9BIFI
tRNA pseudouridine synthase
L2_013_122G1_scaffold_1333_27
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31310..31999)
DNA (690bp) protein (230aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
tRNA pseudouridine synthase B n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XX93_9BIFI
tRNA pseudouridine synthase
L2_013_122G1_scaffold_1333_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32001..32477)
DNA (477bp) protein (159aa)
Ribosome-binding factor A n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW91_BIFLJ
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L2_013_122G1_scaffold_1333_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32628..35588)
DNA (2961bp) protein (987aa)
Translation initiation factor IF-2 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=IF2_BIFLS
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
translation initiation factor IF-2
L2_013_122G1_scaffold_1333_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35858..36925)
DNA (1068bp) protein (356aa)
NusA antitermination factor n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GNA4_BIFLS
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
nusA; transcription elongation factor NusA
Displaying items 1-30 of 74 in total

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