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L2_013_122G1_scaffold_18

Search features with annotation key words

Displaying items 1-30 of 211 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_18_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..347)
DNA (345bp) protein (115aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=C9XR47_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE04396.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_013_122G1_scaffold_18_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(535..912)
DNA (378bp) protein (126aa)
Uncharacterized protein n=211 Tax=Clostridium difficile RepID=C9XR46_CLODC
hypothetical protein
Putative monooxygenase {ECO:0000313|EMBL:CCL29980.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_013_122G1_scaffold_18_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1028..1522)
DNA (495bp) protein (165aa)
ogt2; Methylated-DNA-[protein]-cysteineS-methyltransfe rase 2 (EC:2.1.1.63)
Methylated-DNA-[protein]-cysteine S-methyltransferase 2 {ECO:0000313|EMBL:CAJ68640.1}; EC=2.1.1.63 {ECO:0000313|EMBL:CAJ68640.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Methylated-DNA--protein-cysteine methyltransferase, constitutive n=179 Tax=Clostridium difficile RepID=T3GSD4_CLODC
L2_013_122G1_scaffold_18_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1671..5924)
DNA (4254bp) protein (1418aa)
Putative CoA-substrate-specific enzyme activase domain protein n=2 Tax=Clostridium difficile RepID=T4PLK8_CLODI
Putative CoA-substrate-specific enzyme activase domain protein {ECO:0000313|EMBL:EQE65145.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
CoA enzyme activase
L2_013_122G1_scaffold_18_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6305..7474)
DNA (1170bp) protein (390aa)
Transporter gate domain protein n=168 Tax=Clostridium difficile RepID=G6BBM5_CLODI
hypothetical protein
Transporter gate domain protein {ECO:0000313|EMBL:EHJ26496.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_013_122G1_scaffold_18_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7869..8885)
DNA (1017bp) protein (339aa)
gapB; Glyceraldehyde-3-phosphate dehydrogenase(GAPDH) (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=186 Tax=Clostridium difficile RepID=T3GVP5_CLODC
L2_013_122G1_scaffold_18_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9522..9986)
DNA (465bp) protein (155aa)
Uncharacterized protein n=21 Tax=Clostridium difficile RepID=G6BPC7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ24825.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
lipoprotein
L2_013_122G1_scaffold_18_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10310..10918)
DNA (609bp) protein (203aa)
Hydrolase, NUDIX family n=5 Tax=Clostridium difficile RepID=D5Q4Y8_CLODI
NUDIX family hydrolase
Putative hydrolase, NUDIX family {ECO:0000313|EMBL:CAJ68635.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_013_122G1_scaffold_18_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11000..11701)
DNA (702bp) protein (234aa)
B3/4 domain protein n=206 Tax=Clostridium difficile RepID=C9XR39_CLODC
hypothetical protein
Putative phenylalanyl-tRNA synthetase beta chain {ECO:0000313|EMBL:CCL29974.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_013_122G1_scaffold_18_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11928..12194
DNA (267bp) protein (89aa)
Uncharacterized protein n=147 Tax=Clostridium difficile RepID=T2THV2_CLODI
Putative membrane protein {ECO:0000313|EMBL:CCL21957.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
membrane protein
L2_013_122G1_scaffold_18_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12297..12716)
DNA (420bp) protein (140aa)
Uncharacterized protein n=145 Tax=Clostridium difficile RepID=G6BXR1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE65133.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L2_013_122G1_scaffold_18_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12983..13765)
DNA (783bp) protein (261aa)
Phenazine biosynthesis , PhzF family protein n=12 Tax=Clostridium difficile RepID=T3ELQ0_CLODI
Phenazine biosynthesis , PhzF family protein {ECO:0000313|EMBL:EQE65146.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
phenazine biosynthesis PhzC/PhzF protein
L2_013_122G1_scaffold_18_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13830..14591)
DNA (762bp) protein (254aa)
4Fe-4S binding domain protein n=66 Tax=Clostridium difficile RepID=T3GY66_CLODC
putative iron-sulfur protein
Iron-sulfur protein {ECO:0000313|EMBL:CKH12163.1}; Putative iron-sulfur protein {ECO:0000313|EMBL:CEJ98366.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_013_122G1_scaffold_18_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15096..15230)
DNA (135bp) protein (45aa)
Uncharacterized protein n=48 Tax=Clostridium difficile RepID=T2UT44_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQH99440.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_013_122G1_scaffold_18_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15641..16471)
DNA (831bp) protein (277aa)
Methyltransferase domain protein {ECO:0000313|EMBL:CEJ98364.1}; Methyltransferase type 11 {ECO:0000313|EMBL:CKH12136.1}; EC=2.1.1.64 {ECO:0000313|EMBL:CKH12136.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Methyltransferase domain protein n=17 Tax=Clostridium difficile RepID=T3K1L1_CLODI
methyltransferase domain protein
L2_013_122G1_scaffold_18_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16823..17725)
DNA (903bp) protein (301aa)
Radical SAM superfamily protein n=28 Tax=Clostridium difficile RepID=T2ZLX2_CLODI
Radical SAM superfamily protein {ECO:0000313|EMBL:EQE65290.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
radical SAM superfamily protein
L2_013_122G1_scaffold_18_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17775..18236)
DNA (462bp) protein (154aa)
Pyrimidine dimer DNA glycosylase family protein n=178 Tax=Clostridium difficile RepID=C9XR33_CLODC
hypothetical protein
Pyrimidine dimer DNA glycosylase family protein {ECO:0000313|EMBL:EQG75290.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_013_122G1_scaffold_18_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18288..18743)
DNA (456bp) protein (152aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Peptide deformylase n=148 Tax=Clostridium difficile RepID=C9XR32_CLODC
def1; peptide deformylase 1
L2_013_122G1_scaffold_18_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18715..18978)
DNA (264bp) protein (88aa)
Helix-turn-helix family protein n=3 Tax=Clostridium difficile RepID=T3LTG1_CLODI
transcriptional regulator
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCL29963.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_013_122G1_scaffold_18_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19075..19791)
DNA (717bp) protein (239aa)
Putative membrane protein n=41 Tax=Clostridium difficile RepID=T2TZB5_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQI84416.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
ABC transporter permease
L2_013_122G1_scaffold_18_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19788..20471)
DNA (684bp) protein (228aa)
ABC-type transport system, multidrug-family permease n=30 Tax=Clostridium difficile RepID=U3Y6D0_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQH99433.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
ABC-type transport system, multidrug-familypermease
L2_013_122G1_scaffold_18_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20468..21313)
DNA (846bp) protein (282aa)
ABC-type transport system, multidrug-family ATP-binding protein {ECO:0000313|EMBL:CCL21946.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL21946.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
multidrug family ABC transporter ATP-binding protein (EC:3.6.3.-)
Fluoroquinolones export ATP-binding protein n=2 Tax=Clostridium difficile RepID=T4PFI4_CLODI
L2_013_122G1_scaffold_18_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21427..22017)
DNA (591bp) protein (197aa)
Bacterial regulatory s, tetR family protein n=138 Tax=Clostridium difficile RepID=T3GTK8_CLODC
intron RNA domain IV
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQE65276.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_013_122G1_scaffold_18_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22306..22539
DNA (234bp) protein (78aa)
Uncharacterized protein n=210 Tax=Clostridium difficile RepID=F3Y5U3_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62835.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_013_122G1_scaffold_18_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22770..25157)
DNA (2388bp) protein (796aa)
Cwp13 n=45 Tax=Clostridium difficile RepID=L7PG66_CLODI
Cwp13 {ECO:0000313|EMBL:AFV69397.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
cwp13; putative cell wall binding protein cwp13
L2_013_122G1_scaffold_18_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25349..26104)
DNA (756bp) protein (252aa)
Putative CoA-substrate-specific enzyme activase domain protein n=42 Tax=Clostridium difficile RepID=T2WIB3_CLODI
Putative CoA-substrate-specific enzyme activase domain protein {ECO:0000313|EMBL:EQE65288.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative CoA enzyme activase
L2_013_122G1_scaffold_18_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26129..27280)
DNA (1152bp) protein (384aa)
putative 2-hydroxyacyl-CoA dehydratase (EC:4.2.1.-)
2-hydroxyacyl-CoA dehydratase {ECO:0000313|EMBL:CKH11858.1}; EC=1.3.7.8 {ECO:0000313|EMBL:CKH11858.1};; Putative 2-hydroxyacyl-CoA dehydratase {ECO:0000313|EMBL:CEJ98352.1}; EC=4.2.1.- {ECO:0000313|EMBL:CEJ98352.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
2-hydroxyglutaryl-CoA dehydratase, D-component family protein n=157 Tax=Clostridium difficile RepID=T3GVZ5_CLODC
L2_013_122G1_scaffold_18_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27496..28236)
DNA (741bp) protein (247aa)
EcsC family protein n=184 Tax=Clostridium difficile RepID=C9XR23_CLODC
hypothetical protein
EcsC family protein {ECO:0000313|EMBL:EQE65280.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_013_122G1_scaffold_18_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28308..29297)
DNA (990bp) protein (330aa)
add; Adenosine deaminase (Adenosine aminohydrolase) (EC:3.5.4.4)
Adenosine deaminase (Adenosine aminohydrolase) {ECO:0000313|EMBL:CAJ68615.1}; EC=3.5.4.4 {ECO:0000313|EMBL:CAJ68615.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Adenosine deaminase n=2 Tax=Clostridium difficile RepID=T4PMF3_CLODI
L2_013_122G1_scaffold_18_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29557..30810
DNA (1254bp) protein (418aa)
Sodium/glutamate symporter family protein n=105 Tax=Clostridium difficile RepID=T2TIB0_CLODI
Sodium/glutamate symporter family protein {ECO:0000313|EMBL:EQE65302.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
sodium/glutamate symporter
Displaying items 1-30 of 211 in total

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