ggKbase home page

L2_013_122G1_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 149 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_52_1

Not on your lists

comp(1..222)
DNA (222bp) protein (74aa)
ParB-like partition protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SBJ9_9ZZZZ
parB-like partition protein
ParB-like partition protein {ECO:0000313|EMBL:EKC79019.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_013_122G1_scaffold_52_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(179..1000)
DNA (822bp) protein (274aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Clostridium difficile RepID=T3NLN3_CLODI
Chromosome partitioning protein {ECO:0000313|EMBL:ENZ08366.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
ATPases involved in chromosome partitioning
L2_013_122G1_scaffold_52_3
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1478..1882)
DNA (405bp) protein (135aa)
30S ribosomal protein S9 n=3 Tax=Clostridiales RepID=G9YW61_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rpsI; 30S ribosomal protein S9
L2_013_122G1_scaffold_52_4
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1900..2331)
DNA (432bp) protein (144aa)
50S ribosomal protein L13 n=2 Tax=Clostridiales RepID=G9YW62_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
rplM; 50S ribosomal protein L13
L2_013_122G1_scaffold_52_5
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2554..3312
DNA (759bp) protein (253aa)
PP-loop family protein n=2 Tax=Clostridiales RepID=U2ARY6_9CLOT
PP-loop family protein {ECO:0000313|EMBL:ERI62148.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
PP-loop domain-containing protein
L2_013_122G1_scaffold_52_6
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3488..4522
DNA (1035bp) protein (345aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BYR5_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI62147.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
transcriptional regulator, XRE family
L2_013_122G1_scaffold_52_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4707..4940)
DNA (234bp) protein (78aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YW66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34237.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L2_013_122G1_scaffold_52_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5119..5532)
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YW67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55349.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_013_122G1_scaffold_52_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5939..7267)
DNA (1329bp) protein (443aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YW68_9FIRM
L2_013_122G1_scaffold_52_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7421..8779)
DNA (1359bp) protein (453aa)
UPF0210 protein HMPREF0372_03785 n=3 Tax=Clostridiales RepID=G9YW69_9FIRM
UPF0210 protein HMPREF0995_02047 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_013_122G1_scaffold_52_11
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9151..9342)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CC70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34241.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L2_013_122G1_scaffold_52_12
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9383..9652)
DNA (270bp) protein (90aa)
UPF0237 protein HMPREF0372_04252 n=3 Tax=Clostridiales RepID=G9YXI4_9FIRM
UPF0237 protein HMPREF0995_02049 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ACT domain-containing protein
L2_013_122G1_scaffold_52_13
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9696..10280)
DNA (585bp) protein (195aa)
5'-nucleotidase YfbR (EC:3.1.3.5)
HD domain protein n=3 Tax=Clostridiales RepID=G9YXI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34243.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L2_013_122G1_scaffold_52_14
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10383..10628)
DNA (246bp) protein (82aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YXI6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34244.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
HPr-related phosphotransferase system component
L2_013_122G1_scaffold_52_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10796..12088
DNA (1293bp) protein (431aa)
tRNA methylthiotransferase YqeV n=2 Tax=Clostridiales RepID=G9YXI7_9FIRM
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EHO34245.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_013_122G1_scaffold_52_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12085..13461
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM37541.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_013_122G1_scaffold_52_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14082..14912
DNA (831bp) protein (277aa)
Thymidylate synthase {ECO:0000256|SAAS:SAAS00215270}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00273274};; EC=2.1.1.45 {ECO:0000256|SAAS:SAAS00215290};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CC77_9FIRM
L2_013_122G1_scaffold_52_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14925..15422
DNA (498bp) protein (166aa)
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXJ0_9FIRM
Dihydrofolate reductase {ECO:0000313|EMBL:EHM37531.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_013_122G1_scaffold_52_19
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15409..15978
DNA (570bp) protein (190aa)
Hydrolase, NUDIX family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DK75_9CLOT
Hydrolase, NUDIX family {ECO:0000313|EMBL:ERI80086.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
NUDIX hydrolase
L2_013_122G1_scaffold_52_20
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16135..20229
DNA (4095bp) protein (1365aa)
Repeat protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXJ2_9FIRM
Repeat protein {ECO:0000313|EMBL:EHM37533.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
cell surface protein
L2_013_122G1_scaffold_52_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20300..21643)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM37534.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hemolysin
L2_013_122G1_scaffold_52_22
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21798..23111
DNA (1314bp) protein (438aa)
Chloride transporter, ClC family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BSL0_9CLOT
Chloride transporter, ClC family {ECO:0000313|EMBL:ERI75200.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
eriC; Voltage gated chloride channel protein
L2_013_122G1_scaffold_52_23
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23124..23633)
DNA (510bp) protein (170aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D6S9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI75201.1}; Flags: Fragment;; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L2_013_122G1_scaffold_52_24
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23891..24559
DNA (669bp) protein (223aa)
L-serine ammonia-lyase (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, beta subunit n=2 Tax=Clostridiales RepID=G9YMJ8_9FIRM
L-serine dehydratase, iron-sulfur-dependent, beta subunit {ECO:0000313|EMBL:EHO33843.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L2_013_122G1_scaffold_52_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24561..25409
DNA (849bp) protein (283aa)
L-serine ammonia-lyase (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YMJ9_9FIRM
L-serine dehydratase, iron-sulfur-dependent, alpha subunit {ECO:0000313|EMBL:EHM54035.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_013_122G1_scaffold_52_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25876..26244
DNA (369bp) protein (123aa)
Lactoylglutathione lyase and related lyases (EC:4.4.1.5)
Glyoxalase family protein n=2 Tax=Clostridiales RepID=G9YMK1_9FIRM
Glyoxalase family protein {ECO:0000313|EMBL:EHM54036.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_013_122G1_scaffold_52_27
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26248..27309
DNA (1062bp) protein (354aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=G9YMK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI75181.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L2_013_122G1_scaffold_52_28
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27322..28725
DNA (1404bp) protein (468aa)
Alginate O-acetyltransferase AlgI family protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D149_9CLOT
Alginate O-acetyltransferase AlgI family protein {ECO:0000313|EMBL:ERI75182.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
membrane bound O-acyl transferase MBOAT family protein
L2_013_122G1_scaffold_52_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28738..29949
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YMK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55268.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_013_122G1_scaffold_52_30
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29953..31158
DNA (1206bp) protein (402aa)
Transporter, major facilitator family protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BAN2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO33804.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
Displaying items 1-30 of 149 in total

View Taxonomy