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L2_013_122G1_scaffold_75

Search features with annotation key words

Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_75_1
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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308..499
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS14_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOS24310.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L2_013_122G1_scaffold_75_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(558..1967)
DNA (1410bp) protein (470aa)
Pyruvate/oxaloacetate carboxyltransferase (EC:4.1.1.3)
Conserved carboxylase domain protein n=2 Tax=Clostridium RepID=B6FS15_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23184.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_75_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1985..3136)
DNA (1152bp) protein (384aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase, beta subunit n=2 Tax=Clostridium RepID=B6FS16_9CLOT
Sodium ion-translocating decarboxylase, beta subunit {ECO:0000313|EMBL:EEA81182.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_013_122G1_scaffold_75_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3148..3516)
DNA (369bp) protein (123aa)
Biotin-requiring enzyme n=2 Tax=Clostridium RepID=B6FS17_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23186.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Biotin carboxyl carrier protein
L2_013_122G1_scaffold_75_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3544..4308)
DNA (765bp) protein (255aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Oxaloacetate decarboxylase gamma chain n=2 Tax=Clostridium RepID=R6QMJ3_9CLOT
sodium pump decarboxylases, gamma subunit
L2_013_122G1_scaffold_75_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4323..5759)
DNA (1437bp) protein (479aa)
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) (EC:6.4.1.3)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFS4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23188.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_75_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5987..7774
DNA (1788bp) protein (596aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQZ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23189.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
peptidase M24
L2_013_122G1_scaffold_75_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7803..9176
DNA (1374bp) protein (458aa)
Amino acid/peptide transporter n=2 Tax=Clostridium RepID=B6FS22_9CLOT
Amino acid/peptide transporter {ECO:0000313|EMBL:EEA81092.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transporter, Major Facilitator Superfamily(MFS)
L2_013_122G1_scaffold_75_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9239..11230)
DNA (1992bp) protein (664aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Isopropylmalate/homocitrate/citramalate synthases (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXK2_9CLOT
L2_013_122G1_scaffold_75_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11334..12524)
DNA (1191bp) protein (397aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23192.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_75_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12586..13155)
DNA (570bp) protein (190aa)
Segregation and condensation protein B n=2 Tax=Clostridium RepID=B6FS25_9CLOT
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
segregation and condensation protein B
L2_013_122G1_scaffold_75_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13145..13930)
DNA (786bp) protein (262aa)
Segregation and condensation protein A n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQZ9_9CLOT
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
scpA; chromosome segregation and condensation protein ScpA
L2_013_122G1_scaffold_75_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14022..15053)
DNA (1032bp) protein (344aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FS27_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23195.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sulfate/molybdate ABC transporter ATPase
L2_013_122G1_scaffold_75_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15055..15726)
DNA (672bp) protein (224aa)
Molybdate ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FS28_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23196.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
molybdate ABC transporter permease
L2_013_122G1_scaffold_75_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15730..16527)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23197.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
molybdenum ABC transporter, periplasmic molybdate-binding protein
L2_013_122G1_scaffold_75_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16545..17510)
DNA (966bp) protein (322aa)
Cyclic pyranopterin phosphate synthase {ECO:0000256|SAAS:SAAS00064088}; EC=4.1.99.18 {ECO:0000256|SAAS:SAAS00064088};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFT3_9CLOT
moaA; molybdenum cofactor biosynthesis protein A
L2_013_122G1_scaffold_75_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17507..18379)
DNA (873bp) protein (291aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS31_9CLOT
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EEA81101.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted phosphohydrolases
L2_013_122G1_scaffold_75_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18481..19260)
DNA (780bp) protein (260aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PI15_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23200.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_75_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19296..20873)
DNA (1578bp) protein (526aa)
Resolvase N-terminal domain protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXL3_9CLOT
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CDC23201.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
site-specific recombinase, DNA invertase Pin
L2_013_122G1_scaffold_75_20
unknown

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21323..21508
DNA (186bp) protein (62aa)

This feature has no annotations

L2_013_122G1_scaffold_75_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21637..21900)
DNA (264bp) protein (88aa)
Toxin-antitoxin system toxin component Txe/YoeB family n=1 Tax=Clostridium nexile CAG:348 RepID=R6PR29_9CLOT
Toxin-antitoxin system toxin component Txe/YoeB family {ECO:0000313|EMBL:CDC23224.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
toxin-antitoxin system, toxin component, Txe/YoeB family
L2_013_122G1_scaffold_75_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21893..22159)
DNA (267bp) protein (89aa)
Antitoxin of toxin-antitoxin stability system n=1 Tax=Clostridium nexile CAG:348 RepID=R6PI36_9CLOT
Antitoxin of toxin-antitoxin stability system {ECO:0000313|EMBL:CDC23225.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Antitoxin of toxin-antitoxin stability system
L2_013_122G1_scaffold_75_23
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22373..23728)
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JS18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34240.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
KAP family P-loop domain-containing protein
L2_013_122G1_scaffold_75_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24352..24567)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PR44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23239.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_75_25
Coprococcus sp. CAG:782, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24679..24897
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. CAG:782 RepID=R5JKG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY53269.1}; TaxID=1262863 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:782.;"
Predicted transcriptional regulator
L2_013_122G1_scaffold_75_26
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25039..25437)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BBP1_CLOBO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEH96536.1}; TaxID=1443117 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum D str. 16868.;"
L2_013_122G1_scaffold_75_27
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25461..25667)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YNB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD59052.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L2_013_122G1_scaffold_75_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25926..26396)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23241.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Serine-type D-Ala-D-Ala carboxypeptidase
L2_013_122G1_scaffold_75_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26489..27145)
DNA (657bp) protein (219aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium botulinum F RepID=A7GBS7_CLOBL
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ABS39905.1}; TaxID=441772 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Langeland / NCTC 10281 / Type F).;"
L2_013_122G1_scaffold_75_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27162..29510)
DNA (2349bp) protein (783aa)
ABC-type transport system involved in lipoprotein release permease component n=1 Tax=Clostridium nexile CAG:348 RepID=R6PVX3_9CLOT
ABC-type transport system involved in lipoprotein release permease component {ECO:0000313|EMBL:CDC24914.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
permease
Displaying items 1-30 of 127 in total

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