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L2_013_122G1_scaffold_123

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_123_1
unknown

Not on your lists

3..413
DNA (411bp) protein (137aa)

This feature has no annotations

L2_013_122G1_scaffold_123_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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547..4722
DNA (4176bp) protein (1392aa)
1,2-A-L-fucosidase (EC:3.2.1.51)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82230.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_013_122G1_scaffold_123_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4778..5365)
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22919.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted transcriptional regulators
L2_013_122G1_scaffold_123_4
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5805..10586
DNA (4782bp) protein (1594aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BDJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG80283.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
carbohydrate-binding exported protein
L2_013_122G1_scaffold_123_5
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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10778..11050
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KWE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31974.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L2_013_122G1_scaffold_123_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11336..11506)
DNA (171bp) protein (57aa)
Ferredoxin n=2 Tax=Clostridium RepID=B6FP41_9CLOT
Ferredoxin {ECO:0000313|EMBL:EEA82227.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L2_013_122G1_scaffold_123_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11601..12353)
DNA (753bp) protein (251aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP40_9CLOT
L2_013_122G1_scaffold_123_8
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12516..12758)
DNA (243bp) protein (81aa)
Uncharacterized protein n=6 Tax=Clostridiales RepID=E9RXS8_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:EPD57474.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
formate C-acetyltransferase glycine radical
L2_013_122G1_scaffold_123_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12779..14890)
DNA (2112bp) protein (704aa)
pflB; Pyruvate formate lyase (EC:2.3.1.54)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQ45_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22914.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_123_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15149..16321
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22913.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_013_122G1_scaffold_123_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16318..17736)
DNA (1419bp) protein (473aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP36_9CLOT
Signal transduction histidine kinase
L2_013_122G1_scaffold_123_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17738..18439)
DNA (702bp) protein (234aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82221.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_013_122G1_scaffold_123_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18472..20847)
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Endonuclease MutS2 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP34_9CLOT
MutS2 family protein
L2_013_122G1_scaffold_123_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20945..22198
DNA (1254bp) protein (418aa)
Periplasmic serine protease, DO/DeqQ family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP33_9CLOT
Periplasmic serine protease, DO/DeqQ family {ECO:0000313|EMBL:EEA82219.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L2_013_122G1_scaffold_123_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22212..23156
DNA (945bp) protein (315aa)
HD domain protein n=2 Tax=Clostridium RepID=B6FP32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22908.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
uncharacterized domain HDIG
L2_013_122G1_scaffold_123_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23273..23662
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82175.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator, GntR family
L2_013_122G1_scaffold_123_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23668..25086
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMN5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22099.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_123_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25061..25438
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22097.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_123_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25594..31827
DNA (6234bp) protein (2078aa)
lacZ; beta-galactosidase (EC:3.2.1.23)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP64_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82169.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_013_122G1_scaffold_123_20
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


31999..32148
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G4L7_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
50S ribosomal protein L33
L2_013_122G1_scaffold_123_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32172..32372
DNA (201bp) protein (67aa)
Protein translocase subunit SecE n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP59_9CLOT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
protein translocase subunit secE/sec61 gamma
L2_013_122G1_scaffold_123_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32403..32918
DNA (516bp) protein (172aa)
Transcription termination/antitermination protein NusG n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP58_9CLOT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcription antitermination protein nusG
L2_013_122G1_scaffold_123_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


32971..33396
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=2 Tax=Clostridium RepID=B6FP57_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
50S ribosomal protein L11
L2_013_122G1_scaffold_123_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


33458..34150
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=2 Tax=Clostridium RepID=B6FP56_9CLOT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ribosomal protein L1, bacterial/chloroplast
L2_013_122G1_scaffold_123_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


34571..35104
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FP54_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_122G1_scaffold_123_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


35191..35568
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=2 Tax=Clostridium RepID=B6FP53_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L12P
L2_013_122G1_scaffold_123_27
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35640..36665)
DNA (1026bp) protein (342aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JLT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN38068.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L2_013_122G1_scaffold_123_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36861..40709
DNA (3849bp) protein (1283aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridium RepID=B6FLB3_9CLOT
L2_013_122G1_scaffold_123_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40724..44431
DNA (3708bp) protein (1236aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=2 Tax=Clostridium RepID=B6FLB4_9CLOT
L2_013_122G1_scaffold_123_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

44489..46144
DNA (1656bp) protein (552aa)
pdcA; diguanylate kinase signaling protein (EC:2.7.7.65)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PPV7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22839.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Displaying items 1-30 of 101 in total

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