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L2_013_122G1_scaffold_140

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_140_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(303..845)
DNA (543bp) protein (181aa)
BioY family protein n=2 Tax=Clostridium RepID=B6FK70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22570.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_140_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1015..1851
DNA (837bp) protein (279aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK71_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22569.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_140_3
unknown

Not on your lists

2157..2438
DNA (282bp) protein (94aa)

This feature has no annotations

L2_013_122G1_scaffold_140_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2664..3851
DNA (1188bp) protein (396aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=2 Tax=Clostridium RepID=B6FK78_9CLOT
L2_013_122G1_scaffold_140_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3962..5512
DNA (1551bp) protein (517aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK79_9CLOT
hypothetical protein
L2_013_122G1_scaffold_140_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5505..6194
DNA (690bp) protein (230aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FK80_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23828.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_013_122G1_scaffold_140_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6211..7590
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF4_9CLOT">RepID=R6QPF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23827.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Trk-type K+ transport systems, membrane components
L2_013_122G1_scaffold_140_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7600..8250
DNA (651bp) protein (217aa)
TrkA N-terminal domain protein n=2 Tax=Clostridium RepID=B6FK82_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23826.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
K+ transport systems, NAD-binding component
L2_013_122G1_scaffold_140_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8256..9029
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PJV4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23825.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rRNA methylase, putative, group 3
L2_013_122G1_scaffold_140_10
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9036..9911)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WX55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08596.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
transcriptional regulator
L2_013_122G1_scaffold_140_11
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10131..11801
DNA (1671bp) protein (557aa)
Dihydroxy-acid dehydratase (EC:4.2.1.9)
Putative dihydroxy-acid dehydratase n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C388_9CLOT
Putative dihydroxy-acid dehydratase {ECO:0000313|EMBL:EEG73264.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L2_013_122G1_scaffold_140_12
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11821..12807
DNA (987bp) protein (329aa)
ornithine cyclodeaminase (EC:4.3.1.12)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WP17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08594.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L2_013_122G1_scaffold_140_13
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12824..12952
DNA (129bp) protein (43aa)
Tautomerase enzyme n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1U2_9CLOT
Tautomerase enzyme {ECO:0000313|EMBL:EEG74106.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L2_013_122G1_scaffold_140_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13186..14103
DNA (918bp) protein (306aa)
Cell Wall Hydrolase n=2 Tax=Clostridium RepID=B6FK84_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23824.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
N-acetylmuramoyl-L-alanine amidase
L2_013_122G1_scaffold_140_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14176..17349)
DNA (3174bp) protein (1058aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK85_9CLOT
carbamoyl-phosphate synthase large subunit
L2_013_122G1_scaffold_140_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17327..18439)
DNA (1113bp) protein (371aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Clostridium nexile CAG:348 RepID=R6QPE9_9CLOT
L2_013_122G1_scaffold_140_17
unknown

Not on your lists

comp(18540..18650)
DNA (111bp) protein (37aa)

This feature has no annotations

L2_013_122G1_scaffold_140_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18647..20260)
DNA (1614bp) protein (538aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK88_9CLOT
L2_013_122G1_scaffold_140_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20281..20994)
DNA (714bp) protein (238aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Clostridium RepID=B6FK89_9CLOT
L2_013_122G1_scaffold_140_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21779..22213
DNA (435bp) protein (145aa)
Nodulation efficiency protein D n=2 Tax=Clostridium RepID=B6FK96_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23813.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Membrane protein implicated in regulation of membrane protease activity
L2_013_122G1_scaffold_140_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22218..23174
DNA (957bp) protein (319aa)
SPFH/Band 7/PHB domain protein n=2 Tax=Clostridium RepID=B6FK97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23812.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Membrane protease subunits, stomatin/prohibitin homologs
L2_013_122G1_scaffold_140_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23231..25267
DNA (2037bp) protein (679aa)
Ornithine carbamoyltransferase {ECO:0000256|SAAS:SAAS00106174}; EC=2.1.3.3 {ECO:0000256|SAAS:SAAS00106174};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=2 Tax=Clostridium RepID=B6FK98_9CLOT
L2_013_122G1_scaffold_140_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25288..26268
DNA (981bp) protein (327aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Clostridium RepID=B6FK99_9CLOT
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_140_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26278..26607
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FKA0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83563.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_122G1_scaffold_140_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26607..27380
DNA (774bp) protein (258aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Type III pantothenate kinase n=2 Tax=Clostridium RepID=B6FKA1_9CLOT
hypothetical protein
L2_013_122G1_scaffold_140_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27382..28356
DNA (975bp) protein (325aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
tRNA-dihydrouridine synthase n=2 Tax=Clostridium RepID=B6FKA2_9CLOT
tRNA-U20-dihydrouridine synthase
L2_013_122G1_scaffold_140_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28558..32934
DNA (4377bp) protein (1459aa)
BNR/Asp-box repeat protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKA3_9CLOT
BNR/Asp-box repeat protein {ECO:0000313|EMBL:EEA83566.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative sialidase (neuraminidase)
L2_013_122G1_scaffold_140_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33204..33872
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PJT1_9CLOT
Putative proton-coupled thiamine transporter YuaJ {ECO:0000313|EMBL:EEA83567.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
proton-coupled thiamine transporter YuaJ
L2_013_122G1_scaffold_140_29
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34136..34519
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MQW2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL36148.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L2_013_122G1_scaffold_140_30
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34830..35324
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KA92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS43186.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
Displaying items 1-30 of 84 in total

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