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L2_013_122G1_scaffold_281

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_281_1
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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245..694
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YV30_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB94750.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Putative transposase, YhgA-like.
L2_013_122G1_scaffold_281_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(735..1223)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PJ18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23505.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_281_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1220..2548)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYL2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23506.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
MATE efflux family protein
L2_013_122G1_scaffold_281_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2660..3952
DNA (1293bp) protein (431aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Aspartyl aminopeptidase (EC:3.4.11.21)
M18 family aminopeptidase n=2 Tax=Clostridium RepID=B6FUK2_9CLOT
L2_013_122G1_scaffold_281_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3961..4722
DNA (762bp) protein (254aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=2 Tax=Clostridium RepID=B6FUK1_9CLOT
L2_013_122G1_scaffold_281_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4733..6694
DNA (1962bp) protein (654aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=2 Tax=Clostridium RepID=B6FUK0_9CLOT
L2_013_122G1_scaffold_281_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6698..7366
DNA (669bp) protein (223aa)
Cyclic nucleotide-binding domain protein n=2 Tax=Clostridium RepID=B6FUJ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23510.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
L2_013_122G1_scaffold_281_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7456..7785
DNA (330bp) protein (110aa)
Thioredoxin n=2 Tax=Clostridium RepID=R6PYL4_9CLOT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
trxA; thioredoxin
L2_013_122G1_scaffold_281_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7796..8725
DNA (930bp) protein (310aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Thioredoxin reductase n=2 Tax=Clostridium RepID=B6FUJ7_9CLOT
hypothetical protein
L2_013_122G1_scaffold_281_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8817..10253
DNA (1437bp) protein (479aa)
ATP-dependent Clp protease, ATP-binding subunit ClpX n=2 Tax=Clostridium RepID=B6FUJ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23513.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
endopeptidase Clp ATP-binding regulatory subunit (clpX)
L2_013_122G1_scaffold_281_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10426..11700
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23514.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2)
L2_013_122G1_scaffold_281_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11786..13492
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PJ27_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23515.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Subtilase family.
L2_013_122G1_scaffold_281_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13515..14015
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYL7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23516.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_281_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14016..14486
DNA (471bp) protein (157aa)
Lipoprotein signal peptidase {ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|SAAS:SAAS00112508};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUJ1_9CLOT
peptidase A8 signal peptidase II
L2_013_122G1_scaffold_281_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14532..15266)
DNA (735bp) protein (245aa)
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
Transcriptional regulator, Sir2 family n=2 Tax=Clostridium RepID=B6FUJ0_9CLOT
Transcriptional regulator, Sir2 family {ECO:0000313|EMBL:EEA80289.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_013_122G1_scaffold_281_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15437..15643)
DNA (207bp) protein (69aa)
Cold-shock DNA-binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUI9_9CLOT
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EEA80288.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cold-shock DNA-binding domain-containing protein
L2_013_122G1_scaffold_281_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15853..16107)
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUI8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23520.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Helix-turn-helix.
L2_013_122G1_scaffold_281_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16362..17048
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYM0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23521.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_281_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17041..17991
DNA (951bp) protein (317aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUI5_9CLOT
hypothetical protein
L2_013_122G1_scaffold_281_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18071..18748
DNA (678bp) protein (226aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0Z350_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EGB91482.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
antimicrobial peptide ABC transporter ATPase
L2_013_122G1_scaffold_281_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18751..21156
DNA (2406bp) protein (802aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PZ67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23786.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_281_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21170..22117)
DNA (948bp) protein (316aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EEA80357.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EEA80357.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Lactate dehydrogenase and related dehydrogenases (EC:1.1.1.272)
4-phosphoerythronate dehydrogenase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUC8_9CLOT
L2_013_122G1_scaffold_281_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22267..23103
DNA (837bp) protein (279aa)
NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding (EC:3.6.1.22)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PHG1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23788.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_281_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23257..24114
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUC4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23789.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_281_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24158..25375)
DNA (1218bp) protein (406aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
peptidase T (EC:3.4.11.4)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PJR6_9CLOT
L2_013_122G1_scaffold_281_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25490..26482
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PZ70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23791.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
scrR.1; LacI family sucrose operon transcriptional repressor
L2_013_122G1_scaffold_281_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26662..28074
DNA (1413bp) protein (471aa)
sacP; PTS system, sucrose-specific IIBC component (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QPB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23792.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_281_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28108..29547
DNA (1440bp) protein (480aa)
sacA.1; beta-fructofuranosidase (EC:3.2.1.26)
Sucrose-6-phosphate hydrolase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUB9_9CLOT
Sucrose-6-phosphate hydrolase {ECO:0000313|EMBL:EEA80412.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_013_122G1_scaffold_281_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29633..30274
DNA (642bp) protein (214aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUB8_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEA80411.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcriptional regulator
L2_013_122G1_scaffold_281_30
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30268..31482
DNA (1215bp) protein (405aa)
Transporter, CPA2 family n=1 Tax=Clostridium sp. M62/1 RepID=D4CAV3_9CLOT
Transporter, CPA2 family {ECO:0000313|EMBL:EFE13378.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
sodium/hydrogen exchanger
Displaying items 1-30 of 58 in total

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