ggKbase home page

L2_013_122G1_scaffold_314

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_314_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(524..2215)
DNA (1692bp) protein (564aa)
Uncharacterized protein n=76 Tax=Enterobacteriaceae RepID=Q31V81_SHIBS
eptB; metal dependent hydrolase
Phosphoethanolamine transferase {ECO:0000313|EMBL:AFH13365.1}; TaxID=566546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666; / NRRL B-766 / W).;"
L2_013_122G1_scaffold_314_2
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2539..3747)
DNA (1209bp) protein (403aa)
Major facilitator family transporter n=136 Tax=Enterobacteriaceae RepID=A7ZT93_ECO24
yhjX; resistance protein
Inner membrane protein yhjX {ECO:0000313|EMBL:EIQ24896.1}; TaxID=766138 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 965-58.;"
L2_013_122G1_scaffold_314_3
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3976..4674)
DNA (699bp) protein (233aa)
Uncharacterized protein n=242 Tax=Enterobacteriaceae RepID=A7ZT94_ECO24
lipase
Putative lipase {ECO:0000313|EMBL:ABF05574.1}; TaxID=373384 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri serotype 5b (strain 8401).;"
L2_013_122G1_scaffold_314_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4832..5395
DNA (564bp) protein (188aa)
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:EIH75574.1}; EC=3.2.2.20 {ECO:0000313|EMBL:EIH75574.1};; TaxID=869681 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0522.;"
3-methyl-adenine DNA glycosylase I, constitutive n=317 Tax=Enterobacteriaceae RepID=J7QAF0_ECOLX
tag; 3-methyladenine DNA glycosylase
L2_013_122G1_scaffold_314_5
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5392..5832
DNA (441bp) protein (147aa)
Uncharacterized protein n=347 Tax=Enterobacteriaceae RepID=J7RAJ5_ECOLX
yiaC; acyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADA75894.1}; TaxID=591020 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri serotype X (strain 2002017).;"
L2_013_122G1_scaffold_314_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5801..8134)
DNA (2334bp) protein (778aa)
Biotin sulfoxide reductase n=29 Tax=Escherichia coli RepID=I2PIE3_ECOLX
Trimethylamine N-oxide reductase I catalytic subunit {ECO:0000313|EMBL:AIZ89161.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
bisC; biotin sulfoxide reductase BisC
L2_013_122G1_scaffold_314_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8287..8946
DNA (660bp) protein (220aa)
Probable lipoprotein YiaD n=1128 Tax=Enterobacteriaceae RepID=YIAD_ECOLI
outer membrane lipoprotein
OmpA family protein {ECO:0000313|EMBL:EFK53176.1}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
L2_013_122G1_scaffold_314_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9050..10024
DNA (975bp) protein (325aa)
tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) (EC:1.1.1.215 1.1.1.79 1.1.1.81)
Glyoxylate/hydroxypyruvate reductase B {ECO:0000256|HAMAP-Rule:MF_01667, ECO:0000256|SAAS:SAAS00010468}; EC=1.1.1.79 {ECO:0000256|HAMAP-Rule:MF_01667, ECO:0000256|SAAS:SAAS00010467};; EC=1.1.1.81 {ECO:0000256|HAMAP-Rule:MF_01667, ECO:0000256|SAAS:SAAS00010469};; TaxID=1281237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3304-1.;"
Glyoxylate/hydroxypyruvate reductase B n=821 Tax=Enterobacteriaceae RepID=GHRB_ECO24
L2_013_122G1_scaffold_314_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10074..10784)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Shigella sp. D9 RepID=F4NNT9_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EYD80840.1}; TaxID=1444161 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-176-05_S3_C2.;"
L2_013_122G1_scaffold_314_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11218..11508
DNA (291bp) protein (97aa)
Uncharacterized HTH-type transcriptional regulator YiaG n=1398 Tax=Enterobacteriaceae RepID=YIAG_ECO57
yiaG; putative transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:CDK49153.1}; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
L2_013_122G1_scaffold_314_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11789..12001
DNA (213bp) protein (71aa)
Cold shock protein CspA n=2143 Tax=Bacteria RepID=CSPA_ECO57
cold-shock protein
Cold shock protein CspA {ECO:0000313|EMBL:EQY14956.1}; TaxID=1281218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3212-1.;"
L2_013_122G1_scaffold_314_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12189..12401)
DNA (213bp) protein (71aa)
Hok/gef family protein n=558 Tax=Enterobacteriaceae RepID=J7QIE5_ECOLX
small toxic polypeptide
Small toxic polypeptide {ECO:0000313|EMBL:EJE73398.1}; TaxID=1165939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O111:H11 str. CVM9455.;"
L2_013_122G1_scaffold_314_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12667..14736)
DNA (2070bp) protein (690aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1446753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O69:H11 str. 08-4661.;"
Glycine--tRNA ligase beta subunit n=216 Tax=Enterobacteriaceae RepID=SYGB_ECOSE
glyS; glycine tRNA synthetase subunit beta
L2_013_122G1_scaffold_314_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14746..15657)
DNA (912bp) protein (304aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1446583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O145:H25 str. 07-3858.;"
Glycine--tRNA ligase alpha subunit n=1338 Tax=Enterobacteriaceae RepID=SYGA_CITK8
glyQ; glycyl-tRNA synthetase alpha subunit GlyQ
L2_013_122G1_scaffold_314_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15752..16051)
DNA (300bp) protein (100aa)
Uncharacterized lipoprotein YsaB n=351 Tax=Enterobacteriaceae RepID=YSAB_SHIBS
ysaB; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESD27103.1}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
L2_013_122G1_scaffold_314_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16226..17221
DNA (996bp) protein (332aa)
Uncharacterized protein n=366 Tax=Enterobacteriaceae RepID=J7QX68_ECOLX
hypothetical protein
Inner membrane protein YiaH {ECO:0000313|EMBL:EGU96889.1}; TaxID=796392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 79-10.;"
L2_013_122G1_scaffold_314_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17263..17700)
DNA (438bp) protein (146aa)
Uncharacterized protein n=15 Tax=Enterobacteriaceae RepID=C3SN52_ECOLX
YiaAB two helix domain-containing protein
YiaA/B two helix domain protein {ECO:0000313|EMBL:ESD65609.1}; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
L2_013_122G1_scaffold_314_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17746..18087)
DNA (342bp) protein (114aa)
Uncharacterized protein n=651 Tax=Enterobacteriaceae RepID=C3SN47_ECOLX
hypothetical protein
YiaA/B two helix domain protein {ECO:0000313|EMBL:ESA61895.1}; TaxID=1268976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113290.;"
L2_013_122G1_scaffold_314_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18256..19710)
DNA (1455bp) protein (485aa)
Xylulokinase {ECO:0000313|EMBL:EFZ59851.1}; EC=2.7.1.17 {ECO:0000313|EMBL:EFZ59851.1};; TaxID=670890 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli LT-68.;"
Xylulokinase n=3 Tax=Escherichia coli RepID=E7I7C5_ECOLX
xylulokinase
L2_013_122G1_scaffold_314_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19782..21104)
DNA (1323bp) protein (441aa)
xylose isomerase (EC:5.3.1.5)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1268976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113290.;"
Xylose isomerase n=678 Tax=Enterobacteriaceae RepID=XYLA_ECO27
L2_013_122G1_scaffold_314_21
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21470..22462
DNA (993bp) protein (331aa)
D-xylose transporter subunit XylF n=141 Tax=Enterobacteriaceae RepID=I0VJ95_SHIFL
xylF; D-xylose transporter subunit XylF
D-xylose ABC transporter, D-xylose-binding protein {ECO:0000313|EMBL:EIQ03805.1}; TaxID=766158 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 2850-71.;"
L2_013_122G1_scaffold_314_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22540..24081
DNA (1542bp) protein (514aa)
Xylose import ATP-binding protein XylG {ECO:0000256|HAMAP-Rule:MF_01722}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01722};; TaxID=749548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 196-1.;"
D-xylose ABC transporter, ATP-binding protein n=324 Tax=Escherichia RepID=A7ZTB4_ECO24
xylG; xylose transporter ATP-binding subunit
L2_013_122G1_scaffold_314_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24059..25240
DNA (1182bp) protein (394aa)
Xylose transport system permease protein XylH n=1077 Tax=Enterobacteriaceae RepID=XYLH_ECO57
xylH; Xylose ABC transporter, membrane component XylH
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDZ38326.1}; TaxID=1444137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S3_C1.;"
L2_013_122G1_scaffold_314_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25318..26496
DNA (1179bp) protein (393aa)
Xylose operon regulatory protein n=1170 Tax=Enterobacteriaceae RepID=XYLR_ECO57
AraC family transcriptional regulator
Xylose operon regulatory protein {ECO:0000313|EMBL:EOV53591.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
L2_013_122G1_scaffold_314_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26604..27428)
DNA (825bp) protein (275aa)
Protein bax n=1265 Tax=Enterobacteriaceae RepID=BAX_ECOLI
hypothetical protein
Bax protein {ECO:0000313|EMBL:ELI21021.1}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L2_013_122G1_scaffold_314_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27748..29778
DNA (2031bp) protein (677aa)
Periplasmic alpha-amylase n=1 Tax=Escherichia coli 113302 RepID=V0SPA8_ECOLX
Periplasmic alpha-amylase {ECO:0000313|EMBL:ESD10262.1}; TaxID=1268977 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113302.;"
malS; alpha-amylase
L2_013_122G1_scaffold_314_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29956..31209
DNA (1254bp) protein (418aa)
avtA; valine--pyruvate transaminase (EC:2.6.1.66)
Alanine-alpha-ketoisovalerate (Or valine-pyruvate) transaminase, transaminase C n=383 Tax=Escherichia coli RepID=C3SN02_ECOLX
Aminotransferase class I and II family protein {ECO:0000313|EMBL:KDX44483.1}; TaxID=1444151 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-177-06_S3_C2.;"
L2_013_122G1_scaffold_314_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31361..31834)
DNA (474bp) protein (158aa)
4Fe-4S binding domain-containing protein n=64 Tax=Escherichia coli RepID=E9WLV9_ECOLX
Electron transport protein hydN {ECO:0000313|EMBL:KDW79226.1}; TaxID=1444081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C2.;"
ysaA; 4Fe-4S binding domain protein
L2_013_122G1_scaffold_314_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31936..32784)
DNA (849bp) protein (283aa)
DNA-binding transcriptional repressor n=129 Tax=Escherichia coli RepID=B7M3J8_ECO8A
DNA-binding transcriptional repressor
HTH-type transcriptional regulator yiaJ {ECO:0000313|EMBL:ENA02448.1}; TaxID=1116047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0299917.1.;"
L2_013_122G1_scaffold_314_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32985..33983
DNA (999bp) protein (333aa)
2,3-diketo-L-gulonate reductase {ECO:0000256|HAMAP-Rule:MF_00820}; Short=2,3-DKG reductase {ECO:0000256|HAMAP-Rule:MF_00820};; EC=1.1.1.130 {ECO:0000256|HAMAP-Rule:MF_00820};; 3-dehydro-L-gulonate 2-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00820}; TaxID=1405293 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ATCC BAA-2209.;"
2,3-diketo-L-gulonate reductase n=348 Tax=Enterobacteriaceae RepID=DLGD_ECO55
malate/L-lactate dehydrogenase
Displaying items 1-30 of 48 in total

View Taxonomy