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L2_013_122G1_scaffold_340

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_340_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..102
DNA (102bp) protein (34aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TTG7_9FIRM
L2_013_122G1_scaffold_340_2
unknown

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340..630
DNA (291bp) protein (97aa)

This feature has no annotations

L2_013_122G1_scaffold_340_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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685..3336
DNA (2652bp) protein (884aa)
DNA mismatch repair protein MutS n=2 Tax=Lachnospiraceae RepID=F7JVT5_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA mismatch repair protein MutS
L2_013_122G1_scaffold_340_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3356..5350
DNA (1995bp) protein (665aa)
DNA mismatch repair protein MutL n=3 Tax=Clostridiales RepID=F7JVT6_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DNA mismatch repair protein MutL
L2_013_122G1_scaffold_340_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5351..6319
DNA (969bp) protein (323aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLI4_9FIRM
L2_013_122G1_scaffold_340_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6316..7617
DNA (1302bp) protein (434aa)
Aluminum resistance protein n=3 Tax=Lachnospiraceae RepID=A7B2V9_RUMGN
Aluminum resistance protein {ECO:0000313|EMBL:EDN77732.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Cystathionine beta-lyase family protein involved in aluminum resistance
L2_013_122G1_scaffold_340_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7635..8861
DNA (1227bp) protein (409aa)
Flavoprotein family protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2W0_RUMGN
Flavoprotein family protein {ECO:0000313|EMBL:EDN77733.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
conserved hypothetical protein TIGR00275
L2_013_122G1_scaffold_340_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8848..10440
DNA (1593bp) protein (531aa)
FAD dependent oxidoreductase n=4 Tax=Clostridiales RepID=A7B2W1_RUMGN
FAD dependent oxidoreductase {ECO:0000313|EMBL:EDN77734.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Uncharacterized FAD-dependent dehydrogenases
L2_013_122G1_scaffold_340_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10533..11228
DNA (696bp) protein (232aa)
DNA repair protein RadC n=3 Tax=Lachnospiraceae RepID=A7B2W2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20266.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DNA replication and repair protein RadC
L2_013_122G1_scaffold_340_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11194..12276
DNA (1083bp) protein (361aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2W3_RUMGN
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EDN77736.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Actin-like ATPase involved in cell morphogenesis
L2_013_122G1_scaffold_340_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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12278..13147
DNA (870bp) protein (290aa)
Cell shape-determining protein MreC n=3 Tax=Lachnospiraceae RepID=A7B2W4_RUMGN
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
rod shape-determining protein MreC
L2_013_122G1_scaffold_340_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13166..13699
DNA (534bp) protein (178aa)
Rod shape-determining protein MreD n=4 Tax=Clostridiales RepID=A7B2W5_RUMGN
Rod shape-determining protein MreD {ECO:0000313|EMBL:EGN48414.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
rod shape-determining protein MreD
L2_013_122G1_scaffold_340_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13692..16547
DNA (2856bp) protein (952aa)
Penicillin-binding protein, transpeptidase domain protein n=3 Tax=Lachnospiraceae RepID=A7B2W6_RUMGN
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EDN77739.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
pbpA1; penicillin-binding protein PbpA1
L2_013_122G1_scaffold_340_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16565..17203
DNA (639bp) protein (213aa)
Septum site-determining protein MinC n=3 Tax=Lachnospiraceae RepID=V8C0J7_RUMGN
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Septum formation inhibitor
L2_013_122G1_scaffold_340_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17240..18031
DNA (792bp) protein (264aa)
Site-determining protein n=3 Tax=Lachnospiraceae RepID=A7B2W8_RUMGN
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
septum site-determining protein MinD
L2_013_122G1_scaffold_340_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18043..18252
DNA (210bp) protein (70aa)
Cell division topological specificity factor MinE n=3 Tax=Lachnospiraceae RepID=V8BYQ9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48418.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Septum formation topological specificity factor MinE.
L2_013_122G1_scaffold_340_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18249..19379
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BYL6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20258.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Bacterial cell division membrane protein
L2_013_122G1_scaffold_340_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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19395..19790
DNA (396bp) protein (132aa)
Methylglyoxal synthase {ECO:0000256|SAAS:SAAS00089917}; EC=4.2.3.3 {ECO:0000256|SAAS:SAAS00089921};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=4 Tax=Clostridiales RepID=F7JVV1_9FIRM
L2_013_122G1_scaffold_340_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19774..20811
DNA (1038bp) protein (346aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2X2_RUMGN
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDN77745.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
D-alanyl-D-alanine carboxypeptidase
L2_013_122G1_scaffold_340_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20875..21084)
DNA (210bp) protein (70aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2X3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77746.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L2_013_122G1_scaffold_340_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21213..22592
DNA (1380bp) protein (460aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2X4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48424.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_013_122G1_scaffold_340_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22614..23306
DNA (693bp) protein (231aa)
Pyridoxal phosphate enzyme, YggS family n=3 Tax=Lachnospiraceae RepID=A7B2X5_RUMGN
YggS family pyridoxal phosphate enzyme {ECO:0000313|EMBL:EGN48425.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
pyridoxal phosphate enzyme, YggS family
L2_013_122G1_scaffold_340_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23386..23925
DNA (540bp) protein (180aa)
Cell division protein SepF n=4 Tax=Clostridiales RepID=A7B2X6_RUMGN
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_013_122G1_scaffold_340_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23937..24725
DNA (789bp) protein (263aa)
S4 domain protein n=3 Tax=Lachnospiraceae RepID=A7B2X7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20251.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Uncharacterized conserved protein, contains S4-like domain
L2_013_122G1_scaffold_340_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24751..25275
DNA (525bp) protein (175aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=2 Tax=Clostridiales RepID=R5UCF6_9FIRM
L2_013_122G1_scaffold_340_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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25272..26201
DNA (930bp) protein (310aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.12 5.4.99.-)
Pseudouridine synthase, RluA family n=3 Tax=Lachnospiraceae RepID=A7B2Y0_RUMGN
L2_013_122G1_scaffold_340_27
unknown

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26219..26326
DNA (108bp) protein (36aa)

This feature has no annotations

L2_013_122G1_scaffold_340_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26323..26901
DNA (579bp) protein (193aa)
Phosphatidylglycerophosphate synthase (EC:2.7.8.5)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase n=3 Tax=Lachnospiraceae RepID=V8BYK4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48430.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_013_122G1_scaffold_340_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26888..27517
DNA (630bp) protein (210aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2Y2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48431.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted double-stranded RNA/RNA-DNA hybrid binding protein
L2_013_122G1_scaffold_340_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27549..28439
DNA (891bp) protein (297aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2Y3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48432.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
Displaying items 1-30 of 54 in total

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