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L2_013_122G1_scaffold_408

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_408_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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106..1578
DNA (1473bp) protein (491aa)
Xylulokinase {ECO:0000313|EMBL:EEA84003.1}; EC=2.7.1.17 {ECO:0000313|EMBL:EEA84003.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
xylulokinase (EC:2.7.1.17)
Xylulokinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIX6_9CLOT
L2_013_122G1_scaffold_408_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1625..2506)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNH0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22404.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
AraC family transcriptional regulator
L2_013_122G1_scaffold_408_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2641..2745
DNA (105bp) protein (35aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDK8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22403.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_408_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2738..4096
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QKB2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22402.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
xylose transporter
L2_013_122G1_scaffold_408_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4108..5283
DNA (1176bp) protein (392aa)
beta-glucosidase (EC:3.2.1.58)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22401.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_408_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5304..6950
DNA (1647bp) protein (549aa)
glycoside hydrolase (EC:3.2.1.-)
Glycosyl hydrolase family 43 n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFN6_9CLOT
Glycosyl hydrolase family 43 {ECO:0000313|EMBL:CDC22400.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_408_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6973..7332)
DNA (360bp) protein (120aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridium RepID=B6FIX0_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA83997.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
helix-turn-helix domain-containing protein
L2_013_122G1_scaffold_408_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7500..7979
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIW9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83996.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_013_122G1_scaffold_408_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8089..9144
DNA (1056bp) protein (352aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Clostridium RepID=R6QKA5_9CLOT
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L2_013_122G1_scaffold_408_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9160..13635
DNA (4476bp) protein (1492aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA polymerase III polC-type n=1 Tax=Clostridium nexile CAG:348 RepID=R6PV65_9CLOT
DNA polymerase III subunit alpha
L2_013_122G1_scaffold_408_11
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13836..14549
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JYH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS39239.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
Response regulator of the LytR/AlgR family
L2_013_122G1_scaffold_408_12
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14550..15821
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AQ11_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ28205.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_013_122G1_scaffold_408_13
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15985..16386
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:303 RepID=R7IPH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE52552.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
hypothetical protein
L2_013_122G1_scaffold_408_14
unknown

Not on your lists

16456..17229
DNA (774bp) protein (258aa)

This feature has no annotations

L2_013_122G1_scaffold_408_15
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17301..18026
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LD16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET61499.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L2_013_122G1_scaffold_408_16
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17998..18795
DNA (798bp) protein (266aa)
Uncharacterized protein {ECO:0000313|EMBL:KEZ87491.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
L2_013_122G1_scaffold_408_17
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18785..19612
DNA (828bp) protein (276aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=R6TGV5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC72653.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_013_122G1_scaffold_408_18
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19609..20253
DNA (645bp) protein (215aa)
Antibiotic transport system ATP-binding protein n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KZN4_9FIRM
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:CDB67497.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
antibiotic transport system ATP-binding protein
L2_013_122G1_scaffold_408_19
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20250..20762
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LD12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET61495.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L2_013_122G1_scaffold_408_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21033..26015
DNA (4983bp) protein (1661aa)
beta-N-acetylhexosaminidase (EC:3.2.1.52)
F5/8 type C domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIV8_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA84028.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_013_122G1_scaffold_408_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26165..26365)
DNA (201bp) protein (67aa)
Cold-shock DNA-binding domain protein n=2 Tax=Clostridium RepID=B6FIV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22387.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cspD1; cold-shock protein D1
L2_013_122G1_scaffold_408_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26533..26961
DNA (429bp) protein (143aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridium RepID=B6FIV2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22386.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Iron-sulfur cluster regulator IscR
L2_013_122G1_scaffold_408_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27018..27452
DNA (435bp) protein (145aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridium RepID=B6FIV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22385.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
BadM/Rrf2 family transcriptional regulator
L2_013_122G1_scaffold_408_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27467..28399
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A n=2 Tax=Clostridium RepID=B6FIV0_9CLOT
L2_013_122G1_scaffold_408_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28575..29327
DNA (753bp) protein (251aa)
Transcriptional regulator, DeoR family n=2 Tax=Clostridium RepID=B6FIU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22383.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_408_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29324..30244
DNA (921bp) protein (307aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Tagatose-6-phosphate kinase n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK92_9CLOT
hypothetical protein
L2_013_122G1_scaffold_408_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30257..32182
DNA (1926bp) protein (642aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFL0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22380.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
PTS system protein
L2_013_122G1_scaffold_408_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32249..32506
DNA (258bp) protein (86aa)
Phosphocarrier, HPr family n=2 Tax=Clostridium RepID=B6FIU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22379.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphotransferase system, phosphocarrier protein HPr
L2_013_122G1_scaffold_408_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32535..34157
DNA (1623bp) protein (541aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDI0_9CLOT
L2_013_122G1_scaffold_408_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34318..35709
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK86_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22377.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Permeases
Displaying items 1-30 of 51 in total

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