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L2_013_122G1_scaffold_549

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_549_1
unknown

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2..79
DNA (78bp) protein (26aa)
Putative transposase n=1 Tax=Lactobacillus plantarum IPLA88 RepID=S2VF05_LACPN
putative transposase
L2_013_122G1_scaffold_549_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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166..924
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Lactobacillus rhamnosus HN001 PF7_LACRH">RepID=B5QPF7_LACRH
Membrane protein {ECO:0000313|EMBL:KIC98252.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
hypothetical protein
L2_013_122G1_scaffold_549_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(1038..1232)
DNA (195bp) protein (65aa)
Conserved protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TCC4_LACRG
hypothetical protein
Conserved protein {ECO:0000313|EMBL:CAR87267.1}; Uncharacterized protein {ECO:0000313|EMBL:BAI41843.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L2_013_122G1_scaffold_549_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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1328..4624
DNA (3297bp) protein (1099aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
DNA polymerase III, alpha subunit n=1 Tax=Lactobacillus rhamnosus HN001 PF5_LACRH">RepID=B5QPF5_LACRH
DNA polymerase III alpha subunit
L2_013_122G1_scaffold_549_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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4736..5695
DNA (960bp) protein (320aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
6-phosphofructokinase n=13 Tax=Lactobacillus rhamnosus PF4_LACRH">RepID=B5QPF4_LACRH
pfkA; 6-phosphofructokinase
L2_013_122G1_scaffold_549_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5755..7521
DNA (1767bp) protein (589aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Pyruvate kinase n=10 Tax=Lactobacillus rhamnosus PF3_LACRH">RepID=B5QPF3_LACRH
pyk; pyruvate kinase
L2_013_122G1_scaffold_549_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7750..8211
DNA (462bp) protein (154aa)
UPF0756 membrane protein LRH_04123 n=1 Tax=Lactobacillus rhamnosus HN001 PF2_LACRH">RepID=B5QPF2_LACRH
hypothetical protein
UPF0756 membrane protein LRHM_1320 {ECO:0000256|HAMAP-Rule:MF_01874}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L2_013_122G1_scaffold_549_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8245..9129
DNA (885bp) protein (295aa)
RNA-binding protein, S1-like domain n=1 Tax=Lactobacillus rhamnosus HN001 PF1_LACRH">RepID=B5QPF1_LACRH
cvfB; s1 RNA binding domain
S1 RNA binding domain-containing protein {ECO:0000313|EMBL:EKS52507.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L2_013_122G1_scaffold_549_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9131..10012
DNA (882bp) protein (294aa)
Tyrosine recombinase XerD n=7 Tax=Lactobacillus rhamnosus PF0_LACRH">RepID=B5QPF0_LACRH
xerD; tyrosine recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L2_013_122G1_scaffold_549_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10204..10590
DNA (387bp) protein (129aa)
RibT protein, riboflavin biosynthesis acetyltransferase (GNAT) family n=13 Tax=Lactobacillus rhamnosus RepID=B5QPE9_LACRH
ribT; ribT protein
RibT protein riboflavin biosynthesis acetyltransferase (GNAT) family {ECO:0000313|EMBL:EKS52505.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L2_013_122G1_scaffold_549_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10565..11290
DNA (726bp) protein (242aa)
Segregation and condensation protein A n=1 Tax=Lactobacillus rhamnosus HN001 RepID=B5QPE8_LACRH
scpA; segregation and condensation protein A
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L2_013_122G1_scaffold_549_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11290..11907
DNA (618bp) protein (206aa)
Segregation and condensation protein B n=1 Tax=Lactobacillus rhamnosus HN001 RepID=B5QPE7_LACRH
scpB; segregation and condensation protein B
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L2_013_122G1_scaffold_549_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11891..12637
DNA (747bp) protein (249aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Pseudouridine synthase n=10 Tax=Lactobacillus rhamnosus RepID=B5QPE6_LACRH
rluB; ribosomal large subunit pseudouridine synthase B
L2_013_122G1_scaffold_549_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12933..13511
DNA (579bp) protein (193aa)
Predicted membrane protein n=11 Tax=Lactobacillus rhamnosus RepID=B5QPE5_LACRH
membrane protein
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L2_013_122G1_scaffold_549_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(13682..13939)
DNA (258bp) protein (86aa)
Ferredoxin n=13 Tax=Lactobacillus rhamnosus RepID=C7TCD6_LACRG
fer; ferredoxin
Ferredoxin, 4Fe-4S {ECO:0000313|EMBL:EEN80450.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L2_013_122G1_scaffold_549_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14019..15008
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=2 Tax=Lactobacillus rhamnosus RepID=B5QPE3_LACRH
Uncharacterized protein {ECO:0000313|EMBL:KIC98265.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
hypothetical protein
L2_013_122G1_scaffold_549_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14995..16404
DNA (1410bp) protein (470aa)
Superfamily II DNA helicase n=1 Tax=Lactobacillus rhamnosus HN001 RepID=B5QPE2_LACRH
ATP-dependent DNA helicase, RecQ family protein
ATP-dependent DNA helicase, RecQ family {ECO:0000313|EMBL:AGP74077.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L2_013_122G1_scaffold_549_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16464..17105
DNA (642bp) protein (214aa)
LysM domain protein n=1 Tax=Lactobacillus rhamnosus HN001 RepID=B5QPE1_LACRH
Peptidase M23B {ECO:0000313|EMBL:KIC98267.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
lysM domain protein
L2_013_122G1_scaffold_549_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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17171..17839
DNA (669bp) protein (223aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
Cytidylate kinase n=1 Tax=Lactobacillus rhamnosus HN001 RepID=B5QPE0_LACRH
cytidylate kinase
L2_013_122G1_scaffold_549_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


17924..19234
DNA (1311bp) protein (437aa)
30S ribosomal protein S1 n=12 Tax=Lactobacillus rhamnosus RepID=B5QPD9_LACRH
rpsA; 30S ribosomal protein S1
SSU ribosomal protein S1p {ECO:0000313|EMBL:EKS52495.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L2_013_122G1_scaffold_549_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19381..20688
DNA (1308bp) protein (436aa)
GTPase Der n=12 Tax=Lactobacillus rhamnosus RepID=B5QPD8_LACRH
engA; ribosome-associated GTPase EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L2_013_122G1_scaffold_549_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20922..21197
DNA (276bp) protein (92aa)
Nucleoid DNA-binding protein n=13 Tax=Lactobacillus rhamnosus RepID=B5QPD7_LACRH
hup; DNA-binding protein HU
DNA-binding protein HU {ECO:0000313|EMBL:EEN80458.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L2_013_122G1_scaffold_549_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21380..22645
DNA (1266bp) protein (422aa)
TPR repeats containing protein n=1 Tax=Lactobacillus rhamnosus HN001 RepID=B5QPD6_LACRH
Uncharacterized protein {ECO:0000313|EMBL:KIC98272.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
hypothetical protein
L2_013_122G1_scaffold_549_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22664..23542)
DNA (879bp) protein (293aa)
Conservedmembrane protein n=12 Tax=Lactobacillus rhamnosus RepID=C7TCE5_LACRG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS52490.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L2_013_122G1_scaffold_549_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23643..24839
DNA (1197bp) protein (399aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01263}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01263};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01263}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
CCA-adding enzyme n=1 Tax=Lactobacillus rhamnosus HN001 RepID=B5QPD4_LACRH
tRNA nucleotidyltransferase/poly(A) polymerase
L2_013_122G1_scaffold_549_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24964..25419
DNA (456bp) protein (152aa)
Conserved protein n=7 Tax=Lactobacillus rhamnosus RepID=C7TCE7_LACRG
hypothetical protein
Conserved protein {ECO:0000313|EMBL:CAR87290.1}; Uncharacterized protein {ECO:0000313|EMBL:BAI41866.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L2_013_122G1_scaffold_549_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25568..27481
DNA (1914bp) protein (638aa)
ATPase component of ABC transporter with duplicated ATPase domains n=1 Tax=Lactobacillus rhamnosus HN001 RepID=B5QPD2_LACRH
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIC98275.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
ABC transporter ATP-binding protein
L2_013_122G1_scaffold_549_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27459..28448
DNA (990bp) protein (330aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Thymidylate synthase n=5 Tax=Lactobacillus rhamnosus RepID=B5QPD1_LACRH
thyA; thymidylate synthase
L2_013_122G1_scaffold_549_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28565..29056
DNA (492bp) protein (164aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
Dihydrofolate reductase n=6 Tax=Lactobacillus rhamnosus RepID=B5QPD0_LACRH
Dihydrofolate reductase
L2_013_122G1_scaffold_549_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29191..29832)
DNA (642bp) protein (214aa)
Predicted membrane protein, hemolysin III related protein n=5 Tax=Lactobacillus rhamnosus RepID=B5QPC9_LACRH
putative hemolysin
Hemolysin III related protein {ECO:0000313|EMBL:CAR87294.1}; Putative hemolysin {ECO:0000313|EMBL:BAI41870.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
Displaying items 1-30 of 40 in total

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