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L2_013_122G1_scaffold_582

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_582_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(128..1426)
DNA (1299bp) protein (433aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phosphomethylpyrimidine synthase n=2 Tax=Clostridium RepID=B6FL24_9CLOT
thiC; thiamine biosynthesis protein ThiC
L2_013_122G1_scaffold_582_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1428..2234)
DNA (807bp) protein (269aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EEA83278.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EEA83278.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=2 Tax=Clostridium RepID=B6FL23_9CLOT
L2_013_122G1_scaffold_582_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2247..2882)
DNA (636bp) protein (212aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL22_9CLOT
L2_013_122G1_scaffold_582_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2872..3723)
DNA (852bp) protein (284aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL21_9CLOT
L2_013_122G1_scaffold_582_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3737..4246)
DNA (510bp) protein (170aa)
Protein ThiW n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL20_9CLOT
Protein ThiW {ECO:0000313|EMBL:EEA83275.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
thiW protein
L2_013_122G1_scaffold_582_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4832..6031)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83274.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uncharacterized protein conserved in bacteria C-term(DUF2220).
L2_013_122G1_scaffold_582_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5991..9386)
DNA (3396bp) protein (1132aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83273.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_122G1_scaffold_582_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9343..9981)
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FL17_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22802.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_582_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9983..11383)
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEN7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22803.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_582_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11466..11954)
DNA (489bp) protein (163aa)
Acetyltransferase, GNAT family n=2 Tax=Clostridium RepID=B6FL13_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22805.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
putative acetyltransferase
L2_013_122G1_scaffold_582_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12120..12824)
DNA (705bp) protein (235aa)
4Fe-4S binding domain protein n=3 Tax=Lachnospiraceae RepID=A7B350_RUMGN
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDN77669.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L2_013_122G1_scaffold_582_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12911..13567
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QLG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22807.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_582_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13585..14286)
DNA (702bp) protein (234aa)
L-ribulose 5-phosphate 4-epimerase (EC:5.1.3.4)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PWF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22811.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_582_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14300..15895)
DNA (1596bp) protein (532aa)
Carbohydrate kinase, FGGY family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL07_9CLOT
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EEA83262.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
carbohydrate kinase, FGGY
L2_013_122G1_scaffold_582_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15918..17417)
DNA (1500bp) protein (500aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L-arabinose isomerase (EC:5.3.1.4)
L-arabinose isomerase n=2 Tax=Clostridium RepID=B6FL06_9CLOT
L2_013_122G1_scaffold_582_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17505..18557)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PPT6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22814.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sugar ABC transporter permease
L2_013_122G1_scaffold_582_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18559..19659)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGT3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22815.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter permease
L2_013_122G1_scaffold_582_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19659..21227)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PWF8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22816.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sugar ABC transporter ATP-binding protein
L2_013_122G1_scaffold_582_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21280..22272)
DNA (993bp) protein (331aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FL01_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83286.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sugar ABC transporter substrate-binding protein
L2_013_122G1_scaffold_582_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22423..23904)
DNA (1482bp) protein (494aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEP9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22818.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_122G1_scaffold_582_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23908..25527)
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPU0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22819.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L2_013_122G1_scaffold_582_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25551..26585)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83292.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_013_122G1_scaffold_582_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26666..27559)
DNA (894bp) protein (298aa)
LysR substrate binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKZ6_9CLOT
LysR substrate binding domain protein {ECO:0000313|EMBL:EEA83291.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcriptional regulator
L2_013_122G1_scaffold_582_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27738..28463
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QLH6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22822.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_122G1_scaffold_582_25
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28616..29404)
DNA (789bp) protein (263aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KWL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31972.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
transposase
Displaying 25 items

View Taxonomy