ggKbase home page

L2_013_122G1_scaffold_649

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_649_1
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..228)
DNA (228bp) protein (76aa)
Possible cell surface protein similar to FimAfimbrial subunit n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A3G5_BIFAA
cell surface protein fimafimbrial subunit
Possible cell surface protein similar to FimAfimbrial subunit {ECO:0000313|EMBL:BAF40248.1}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L2_013_122G1_scaffold_649_2
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(391..3018)
DNA (2628bp) protein (876aa)
von Willebrand factor type A domain protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H488_9BIFI
truncated clumping factor
Truncated clumping factor {ECO:0000313|EMBL:AJE06595.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L2_013_122G1_scaffold_649_3
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3145..4422)
DNA (1278bp) protein (426aa)
Possible sortase-like protein n=2 Tax=root RepID=R5GRA4_9BIFI
Sortase {ECO:0000313|EMBL:KFI94977.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
sortase-like protein
L2_013_122G1_scaffold_649_4
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4697..5515)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GVE3_9BIFI
TIM-barrel domain protein {ECO:0000313|EMBL:KIM01624.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
hypothetical protein
L2_013_122G1_scaffold_649_5
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5804..6349)
DNA (546bp) protein (182aa)
Transposase n=2 Tax=Bifidobacterium RepID=A1A3H0_BIFAA
transposase
Transposase {ECO:0000313|EMBL:KIM01625.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L2_013_122G1_scaffold_649_6
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6617..7738
DNA (1122bp) protein (374aa)
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A3H1_BIFAA
gluQ; glutamyl-Q tRNA(Asp) synthetase
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000313|EMBL:BAF40254.1}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L2_013_122G1_scaffold_649_7
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7834..8736)
DNA (903bp) protein (301aa)
Membrane protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GVE9_9BIFI
membrane protein
Membrane protein {ECO:0000313|EMBL:AII76949.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L2_013_122G1_scaffold_649_8
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8912..9643)
DNA (732bp) protein (244aa)
Glycerol uptake facilitator-like protein in Mip family n=3 Tax=Bifidobacterium RepID=A1A3H3_BIFAA
glpF; glycerol uptake facilitator protein
Glycerol uptake facilitator protein {ECO:0000313|EMBL:KFI94972.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
L2_013_122G1_scaffold_649_9
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10448..10894)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=3 Tax=Bifidobacterium RepID=RL9_BIFAA
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L2_013_122G1_scaffold_649_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10914..11162)
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=3 Tax=Bifidobacterium RepID=RS18_BIFAA
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
L2_013_122G1_scaffold_649_11
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11249..11908)
DNA (660bp) protein (220aa)
Single-stranded DNA-binding protein n=3 Tax=Bifidobacterium RepID=A1A3I0_BIFAA
single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein)
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L2_013_122G1_scaffold_649_12
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(11951..12238)
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=6 Tax=Bifidobacterium RepID=A1A3I1_BIFAA
30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
L2_013_122G1_scaffold_649_13
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12519..13532)
DNA (1014bp) protein (338aa)
prsA1; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
Ribose-phosphate pyrophosphokinase n=2 Tax=Bifidobacterium RepID=A1A3I2_BIFAA
L2_013_122G1_scaffold_649_14
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13638..14630)
DNA (993bp) protein (331aa)
PfkB family sugar kinase {ECO:0000313|EMBL:KFI94965.1}; EC=2.7.1.15 {ECO:0000313|EMBL:KFI94965.1};; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
Putative ribokinase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A799_BIFAD
sugar kinase in PfkB family
L2_013_122G1_scaffold_649_15
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14742..16211)
DNA (1470bp) protein (490aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A7A0_BIFAD
tetracycline resistance protein
MFS superfamily transporter {ECO:0000313|EMBL:KFI94964.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
L2_013_122G1_scaffold_649_16
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16338..17294)
DNA (957bp) protein (319aa)
Putative nucleoside hydrolase protein {ECO:0000313|EMBL:KFI94963.1}; EC=3.2.2.3 {ECO:0000313|EMBL:KFI94963.1};; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
Inosine-uridine preferring nucleoside hydrolase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A7A2_BIFAD
putative nucleoside hydrolase protein
L2_013_122G1_scaffold_649_17
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17570..18628)
DNA (1059bp) protein (353aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A7A4_BIFAD
ribose operon repressor RbsR
Ribose operon repressor RbsR {ECO:0000313|EMBL:AJE06614.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L2_013_122G1_scaffold_649_18
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18832..19305
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A7A5_BIFAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDN82688.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L2_013_122G1_scaffold_649_19
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19922..20977)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PXB2_9BIFI
DTDP-glucose 4,6-dehydratase enzyme involved in rhamnose biosynthesis
L2_013_122G1_scaffold_649_20
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21335..21625
DNA (291bp) protein (97aa)
RelB/DinJ family addiction module antitoxin n=1 Tax=Enterorhabdus caecimuris B7 RepID=R9KW15_9ACTN
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ29874.1}; RelB antitoxin {ECO:0000313|EMBL:KFI64575.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
hypothetical protein
L2_013_122G1_scaffold_649_21
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22384..23751
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSZ9_9BIFI
AAA+ superfamily protein
AAA+ superfamily protein {ECO:0000313|EMBL:AJE06619.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L2_013_122G1_scaffold_649_22
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24005..26623
DNA (2619bp) protein (873aa)
Arylsulfatase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSZ8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAR02510.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
sulfatase
L2_013_122G1_scaffold_649_23
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26687..27016)
DNA (330bp) protein (110aa)
glf; UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase (Fragment) n=2 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XXK9_9BIFI
UDP-galactopyranose mutase {ECO:0000313|EMBL:EEB20585.1}; Flags: Fragment;; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L2_013_122G1_scaffold_649_24
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27016..27255)
DNA (240bp) protein (80aa)
UDP-galactopyranose mutase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A3H0_BIFAD
putative UDP-galactopyranose mutase
Putative UDP-galactopyranose mutase {ECO:0000313|EMBL:BAR01110.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Displaying 24 items

View Taxonomy