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L2_013_122G1_scaffold_799

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_799_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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484..2073
DNA (1590bp) protein (530aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=265 Tax=Enterobacteriaceae RepID=PUR9_ECO8A
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1116047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0299917.1.;"
L2_013_122G1_scaffold_799_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2085..3374
DNA (1290bp) protein (430aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 85-1.;"
Phosphoribosylamine--glycine ligase n=115 Tax=Escherichia coli RepID=A7ZUM2_ECO24
L2_013_122G1_scaffold_799_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3371..4696)
DNA (1326bp) protein (442aa)
Response regulator ZraR n=82 Tax=Enterobacteriaceae RepID=B2TWJ1_SHIB3
zraR; transcriptional regulatory protein ZraR
Strain O157 SvETEC scaffold46.1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ44550.1}; Transcriptional regulator {ECO:0000313|EMBL:KJW28878.1}; Transcriptional regulatory protein {ECO:0000313|EMBL:AJE58560.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L2_013_122G1_scaffold_799_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4693..6069)
DNA (1377bp) protein (459aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
Sensor protein n=239 Tax=Escherichia coli RepID=J7R8Q4_ECOLX
sensor protein ZraS
L2_013_122G1_scaffold_799_5
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6176..6304
DNA (129bp) protein (43aa)
Uncharacterized protein n=663 Tax=Enterobacteriaceae RepID=B5Z099_ECO5E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFW47969.1}; TaxID=941429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae CDC 74-1112.;"
L2_013_122G1_scaffold_799_6
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6307..6732
DNA (426bp) protein (142aa)
Zinc resistance-associated protein n=87 Tax=Enterobacteriaceae RepID=A8A7A2_ECOHS
zraP; zinc resistance protein
Zinc resistance protein {ECO:0000313|EMBL:EGI90577.1}; TaxID=766142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae 155-74.;"
L2_013_122G1_scaffold_799_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6734..7369)
DNA (636bp) protein (212aa)
Uncharacterized protein n=119 Tax=Enterobacteriaceae RepID=C3SI37_ECOLX
yjaH; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOW03608.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
L2_013_122G1_scaffold_799_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7442..7714)
DNA (273bp) protein (91aa)
DNA-binding protein HU-alpha n=1444 Tax=Enterobacteriaceae RepID=DBHA_ECO57
transcriptional regulator HU subunit alpha
DNA-binding protein HU-alpha {ECO:0000313|EMBL:EFJ84259.1}; TaxID=749533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 84-1.;"
L2_013_122G1_scaffold_799_9
Escherichia sp. KTE52, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7901..8491)
DNA (591bp) protein (197aa)
Uncharacterized protein YjaG n=506 Tax=Enterobacteriaceae RepID=YJAG_ECOLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOV46022.1}; TaxID=1182659 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE52.;"
L2_013_122G1_scaffold_799_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8534..9205)
DNA (672bp) protein (224aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021561.2.;"
Endonuclease V n=1 Tax=Escherichia coli IS5 RepID=V6EQL2_ECOLX
nfi; endonuclease V
L2_013_122G1_scaffold_799_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9215..10279)
DNA (1065bp) protein (355aa)
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1417796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli LAU-EC10.;"
Uroporphyrinogen decarboxylase n=541 Tax=cellular organisms RepID=DCUP_ECO24
L2_013_122G1_scaffold_799_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10319..11092)
DNA (774bp) protein (258aa)
NADH pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016168}; EC=3.6.1.22 {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016202};; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021561.2.;"
NADH pyrophosphatase n=510 Tax=cellular organisms RepID=NUDC_ECO24
nudC; NADH pyrophosphatase
L2_013_122G1_scaffold_799_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11187..11663
DNA (477bp) protein (159aa)
Regulator of sigma D n=964 Tax=Enterobacteriaceae RepID=RSD_ECO24
regulator of RpoD, Rsd/AlgQ
Regulator of sigma D {ECO:0000256|HAMAP-Rule:MF_01181, ECO:0000256|SAAS:SAAS00010112}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
L2_013_122G1_scaffold_799_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11896..13791
DNA (1896bp) protein (632aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1444224 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-373-03_S4_C1.;"
Phosphomethylpyrimidine synthase n=274 Tax=cellular organisms RepID=THIC_ECO8A
thiC; thiamine biosynthesis protein ThiC
L2_013_122G1_scaffold_799_15
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13791..14426
DNA (636bp) protein (212aa)
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=766143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae 225-75.;"
Thiamine-phosphate synthase n=245 Tax=Enterobacteriaceae RepID=THIE_ECOSE
L2_013_122G1_scaffold_799_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14419..15174
DNA (756bp) protein (252aa)
Thiazole biosynthesis adenylyltransferase ThiF n=3 Tax=Escherichia coli RepID=I2RQY8_ECOLX
Molybdopterin biosynthesis protein MoeB {ECO:0000313|EMBL:KDV37589.1}; TaxID=1446583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O145:H25 str. 07-3858.;"
thiF; thiamin (thiazole moiety) biosynthesis protein
L2_013_122G1_scaffold_799_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15158..15358
DNA (201bp) protein (67aa)
Thiamine biosynthesis protein ThiS n=150 Tax=Enterobacteriaceae RepID=A8A791_ECOHS
thiS; sulfur carrier protein ThiS
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:ENA27094.1}; TaxID=1116113 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BCE007_MS-11.;"
L2_013_122G1_scaffold_799_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15360..16130
DNA (771bp) protein (257aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Thiazole synthase n=40 Tax=Enterobacteriaceae RepID=THIG_ECOHS
thiG; thiazole synthase
L2_013_122G1_scaffold_799_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16127..17260
DNA (1134bp) protein (378aa)
Thiamin biosynthesis, thiazole moiety n=122 Tax=Enterobacteriaceae RepID=J7QAX3_ECOLX
thiamine biosynthesis protein ThiH
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:KDX23594.1}; TaxID=1444231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S4_C2.;"
L2_013_122G1_scaffold_799_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17670..18209)
DNA (540bp) protein (180aa)
Heat shock protein C n=480 Tax=Enterobacteriaceae RepID=HTRC_ECOLI
stationary phase growth adaptation protein
Heat shock protein htrC {ECO:0000313|EMBL:EHW09874.1}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
L2_013_122G1_scaffold_799_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18422..22480)
DNA (4059bp) protein (1353aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=749532 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 78-1.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) RepID=C9QV89_ECOD1
DNA-directed RNA polymerase subunit beta'
L2_013_122G1_scaffold_799_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(22603..26631)
DNA (4029bp) protein (1343aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
DNA-directed RNA polymerase subunit beta n=1301 Tax=Enterobacteriaceae RepID=RPOB_ECO24
L2_013_122G1_scaffold_799_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26951..27316)
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=1424 Tax=Enterobacteriaceae RepID=RL7_ECO24
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1444179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-177-06_S3_C3.;"
L2_013_122G1_scaffold_799_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27383..27880)
DNA (498bp) protein (166aa)
50S ribosomal protein L10 n=1406 Tax=Enterobacteriaceae RepID=RL10_ECO24
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=941323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli VR50.;"
L2_013_122G1_scaffold_799_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(28293..28997)
DNA (705bp) protein (235aa)
50S ribosomal protein L1 n=1328 Tax=Enterobacteriaceae RepID=RL1_ECO24
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.12.;"
L2_013_122G1_scaffold_799_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(29001..29429)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1981 Tax=Enterobacteriaceae RepID=RL11_ECO24
50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1281213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3200-1.;"
L2_013_122G1_scaffold_799_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29588..30133)
DNA (546bp) protein (182aa)
Transcription termination/antitermination protein NusG n=1026 Tax=Enterobacteriaceae RepID=NUSG_ECO57
nusG; transcription termination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
L2_013_122G1_scaffold_799_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30135..30518)
DNA (384bp) protein (128aa)
Protein translocase subunit SecE n=1377 Tax=Enterobacteriaceae RepID=SECE_ECO57
secE; preprotein translocase
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1444184 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-460-02_S3_C3.;"
L2_013_122G1_scaffold_799_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30748..30864)
DNA (117bp) protein (39aa)
Elongation protein Tu domain-containing protein n=1 Tax=Escherichia coli E1167 RepID=E9WAM7_ECOLX
translation elongation factor Tu
Elongation factor Tu 2 {ECO:0000313|EMBL:EMV15541.1}; TaxID=1116002 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli C-34666.;"
Displaying 29 items

View Taxonomy