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L2_013_122G1_scaffold_1171

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_1171_1
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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3..644
DNA (642bp) protein (214aa)
Putative sugar-specific permease SgaT/UlaA n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W918_ATOPD
PTS system sugar-specific permease component {ECO:0000313|EMBL:EWC93729.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
putative sugar-specific permease SgaT/UlaA
L2_013_122G1_scaffold_1171_2
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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736..1086
DNA (351bp) protein (117aa)
Phosphotransferase system lactose/cellobiose-specific IIB subunit n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W919_ATOPD
PTS system, lactose/cellobiose-specific IIB subunit {ECO:0000313|EMBL:EWC94497.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
PTS system lactose/cellobiose-specific transporter subunit IIB
L2_013_122G1_scaffold_1171_3
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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1169..1990
DNA (822bp) protein (274aa)
Transketolase domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W920_ATOPD
Transketolase, thiamine pyrophosphate-binding domain protein {ECO:0000313|EMBL:EWC94441.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
transketolase
L2_013_122G1_scaffold_1171_4
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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1992..2933
DNA (942bp) protein (314aa)
Transketolase central region n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W921_ATOPD
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EWC93711.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
transketolase
L2_013_122G1_scaffold_1171_5
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(3518..4330)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Actinomyces graevenitzii F0530 RepID=U1R503_9ACTO
Putative membrane protein {ECO:0000313|EMBL:EWC93701.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
L2_013_122G1_scaffold_1171_6
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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4794..5774
DNA (981bp) protein (327aa)
SIS domain protein n=1 Tax=Olsenella profusa F0195 RepID=U2TWI3_9ACTN
SIS domain protein {ECO:0000313|EMBL:EWC94493.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
sugar isomerase (SIS)
L2_013_122G1_scaffold_1171_7
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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6001..6924
DNA (924bp) protein (308aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
PTS system, mannose-specific IIB component n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZVS7_9ACTN
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EWC94436.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
L2_013_122G1_scaffold_1171_8
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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6940..7749
DNA (810bp) protein (270aa)
PTS system, mannose-specific IIC component n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S3APX5_9ACTN
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EWC94454.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L2_013_122G1_scaffold_1171_9
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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7763..8590
DNA (828bp) protein (276aa)
PTS system, mannose-specific IID component n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZNN4_9ACTN
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EWC94473.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
PTS system IID component, Man family (TC 4.A.6)
L2_013_122G1_scaffold_1171_10
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8656..9639
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S3A831_9ACTN
SIS domain protein {ECO:0000313|EMBL:EWC94444.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Predicted phosphosugar isomerases
L2_013_122G1_scaffold_1171_11
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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9816..10538
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZPS0_9ACTN
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EWC94449.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Transcriptional regulators
L2_013_122G1_scaffold_1171_12
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(11095..12153)
DNA (1059bp) protein (353aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:EWC94492.1}; EC=1.1.1.157 {ECO:0000313|EMBL:EWC94492.1};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W922_ATOPD
3-hydroxybutyryl-CoA dehydrogenase
L2_013_122G1_scaffold_1171_13
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12358..12654
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W923_ATOPD
Uncharacterized protein {ECO:0000313|EMBL:EWC93735.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
L2_013_122G1_scaffold_1171_14
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12718..14427
DNA (1710bp) protein (570aa)
Putative uncharacterized protein n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7UWI1_EEGSY
PF09848 family protein {ECO:0000313|EMBL:EWC93731.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
L2_013_122G1_scaffold_1171_15
unknown

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14593..14742
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 15 items

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