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L2_013_122G1_scaffold_837

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_837_1
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(1..561)
DNA (561bp) protein (187aa)
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EWC94172.1}; EC=3.2.2.- {ECO:0000313|EMBL:EWC94172.1};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Phage SPO1 DNA polymerase-related protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W879_ATOPD
phage SPO1 DNA polymerase-like protein
L2_013_122G1_scaffold_837_2
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(561..1715)
DNA (1155bp) protein (385aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W880_ATOPD
L2_013_122G1_scaffold_837_3
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(1725..3350)
DNA (1626bp) protein (542aa)
Carbohydrate kinase, YjeF related protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W881_ATOPD
YjeF family protein {ECO:0000313|EMBL:EWC94179.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
carbohydrate kinase
L2_013_122G1_scaffold_837_4
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3354..3884)
DNA (531bp) protein (177aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071085}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071082};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W882_ATOPD
holo-acyl-carrier-protein synthase
L2_013_122G1_scaffold_837_5
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3909..5252)
DNA (1344bp) protein (448aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Phosphoglucosamine mutase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W883_ATOPD
phosphoglucosamine mutase
L2_013_122G1_scaffold_837_6
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(5482..5877)
DNA (396bp) protein (132aa)
30S ribosomal protein S9 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W884_ATOPD
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
30S ribosomal protein S9
L2_013_122G1_scaffold_837_7
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(5881..6321)
DNA (441bp) protein (147aa)
50S ribosomal protein L13 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W885_ATOPD
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
50S ribosomal protein L13
L2_013_122G1_scaffold_837_8
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

6702..7640
DNA (939bp) protein (313aa)
1-phosphofructokinase {ECO:0000313|EMBL:EWC92964.1}; EC=2.7.1.56 {ECO:0000313|EMBL:EWC92964.1};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
1-phosphofructokinase (EC:2.7.1.56)
1-phosphofructokinase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLC0_9ACTN
L2_013_122G1_scaffold_837_9
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8102..8497)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLC1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EWC92973.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
L2_013_122G1_scaffold_837_10
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8589..9545)
DNA (957bp) protein (319aa)
Patatin n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W888_ATOPD
Phospholipase, patatin family {ECO:0000313|EMBL:EWC92978.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
patatin
L2_013_122G1_scaffold_837_11
Guillardia theta, Guillardia, Pyrenomonadales, Cryptophyta, Eukaryota

Not on your lists

9646..9981
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Guillardia theta CCMP2712 RepID=L1JMK5_GUITH
Uncharacterized protein {ECO:0000313|EMBL:EKX49288.1, ECO:0000313|EnsemblProtists:EKX49288}; TaxID=905079 species="Eukaryota; Cryptophyta; Pyrenomonadales; Geminigeraceae; Guillardia.;" source="Guillardia theta CCMP2712.;"
L2_013_122G1_scaffold_837_12
unknown

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10197..10430
DNA (234bp) protein (78aa)

This feature has no annotations

L2_013_122G1_scaffold_837_13
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10682..11821
DNA (1140bp) protein (380aa)
Transcriptional regulator, XRE family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W889_ATOPD
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EWC94083.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
XRE family transcriptional regulator
L2_013_122G1_scaffold_837_14
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12280..12795)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZJU3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EWC94064.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
L2_013_122G1_scaffold_837_15
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12895..13341)
DNA (447bp) protein (149aa)
Response regulator receiver protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W895_ATOPD
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EWC92406.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
response regulator receiver protein
L2_013_122G1_scaffold_837_16
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13680..15746)
DNA (2067bp) protein (689aa)
Conserved repeat domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W899_ATOPD
Repeat protein {ECO:0000313|EMBL:EWC94065.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
L2_013_122G1_scaffold_837_17
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16011..16325)
DNA (315bp) protein (105aa)
Gram-positive signal peptide protein, YSIRK family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CND0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EWC92404.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
L2_013_122G1_scaffold_837_18
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16907..18595)
DNA (1689bp) protein (563aa)
Flavin reductase {ECO:0000313|EMBL:EWC94528.1}; EC=1.7.-.- {ECO:0000313|EMBL:EWC94528.1};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
NAD(P)H dehydrogenase (Quinone) n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8A0_ATOPD
NAD(P)H dehydrogenase (quinone)
L2_013_122G1_scaffold_837_19
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18576..19142)
DNA (567bp) protein (189aa)
Transcriptional regulator, PadR family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CND2_9ACTN
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EWC94529.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
PadR-like family transcriptional regulator
L2_013_122G1_scaffold_837_20
Actinomyces europaeus, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19298..19840
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Eggerthella sp. 1_3_56FAA RepID=E5X6Z9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EPD30959.1}; TaxID=883069 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces europaeus ACS-120-V-Col10b.;"
hypothetical protein
L2_013_122G1_scaffold_837_21
Eggerthella sp. HGA1, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

19837..19965
DNA (129bp) protein (43aa)
Putative uncharacterized protein n=1 Tax=Eggerthella sp. HGA1 RepID=F0HPY7_9ACTN
Putative uncharacterized protein {ECO:0000313|EMBL:EGC88785.1}; TaxID=910311 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. HGA1.;"
L2_013_122G1_scaffold_837_22
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20135..21001)
DNA (867bp) protein (289aa)
Beta-lactamase domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8A2_ATOPD
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EWC93579.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
beta-lactamase domain-containing protein
Displaying 22 items

View Taxonomy