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L2_013_122G1_scaffold_157

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_122G1_scaffold_157_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..526
DNA (525bp) protein (175aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JEC5_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJF38912.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC-type multidrug transport system, ATPase and permease components
L2_013_122G1_scaffold_157_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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547..918
DNA (372bp) protein (124aa)
Iron dependent repressor DNA binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK69_9FIRM
Iron-dependent transcriptional regulator {ECO:0000313|EMBL:KJF38911.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Mn-dependent transcriptional regulator
L2_013_122G1_scaffold_157_3
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1379..1804
DNA (426bp) protein (142aa)
Sigma-70, region 4 (Fragment) n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DA93_CLOS4
Sigma-70, region 4 {ECO:0000313|EMBL:ERI99719.1}; Flags: Fragment;; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Sigma-70, region 4.
L2_013_122G1_scaffold_157_4
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1866..2240)
DNA (375bp) protein (125aa)
DNA-binding helix-turn-helix protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R7Z8_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDP12222.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
Predicted transcriptional regulators
L2_013_122G1_scaffold_157_5
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2537..4051
DNA (1515bp) protein (505aa)
Resolvase n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZJ4_CLOA9
resolvase
Resolvase {ECO:0000313|EMBL:AFS79218.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
L2_013_122G1_scaffold_157_6
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4143..4496
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VSU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61245.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L2_013_122G1_scaffold_157_7
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(4627..5088)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DU78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81487.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L2_013_122G1_scaffold_157_8
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5469..5924
DNA (456bp) protein (152aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridium RepID=R5TB53_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCZ62915.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
hypothetical protein
L2_013_122G1_scaffold_157_9
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

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6081..6416
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VKT5_9FIRM
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR02192.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
Nucleotidyltransferase domain.
L2_013_122G1_scaffold_157_10
Azospirillum sp. CAG:239, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6542..7075
DNA (534bp) protein (178aa)
ogt1; Methylated-DNA-[protein]-cysteineS-methyltransfe rase 1 (EC:2.1.1.63)
6-O-methylguanine DNA methyltransferase DNA binding domain protein n=1 Tax=Azospirillum sp. CAG:239 RepID=R6JS40_9PROT
6-O-methylguanine DNA methyltransferase DNA binding domain protein {ECO:0000313|EMBL:CDB52922.1}; TaxID=1262705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; environmental samples.;" source="Azospirillum sp. CAG:239.;"
L2_013_122G1_scaffold_157_11
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7267..8460
DNA (1194bp) protein (398aa)
Transporter, major facilitator family protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CJ61_9CLOT
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERI67361.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
major facilitator transporter
L2_013_122G1_scaffold_157_12
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8662..9726
DNA (1065bp) protein (355aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GB92_9FIRM
L2_013_122G1_scaffold_157_13
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9770..10663)
DNA (894bp) protein (298aa)
PHP domain protein {ECO:0000313|EMBL:EEG37421.1}; EC=3.1.3.- {ECO:0000313|EMBL:EEG37421.1};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
PHP domain protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ETJ1_9FIRM
PHP domain-containing protein
L2_013_122G1_scaffold_157_14
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10959..14900
DNA (3942bp) protein (1314aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G0Q6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB17895.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Zinc finger-domain-containing protein
L2_013_122G1_scaffold_157_15
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15033..16397)
DNA (1365bp) protein (455aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GCJ1_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:CCY13624.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
cell envelope-related function transcriptional attenuator common domain
L2_013_122G1_scaffold_157_16
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16555..17982)
DNA (1428bp) protein (476aa)
Undecaprenyl-phosphate glucose phosphotransferase n=1 Tax=Eubacterium sp. CAG:146 RepID=R5G7Z1_9FIRM
Undecaprenyl-phosphate glucose phosphotransferase {ECO:0000313|EMBL:CCY13430.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
Undecaprenyl-phosphate glucose phosphotransferase
L2_013_122G1_scaffold_157_17
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18247..19998
DNA (1752bp) protein (584aa)
Trypsin n=1 Tax=Eubacterium hallii CAG:12 RepID=R6FXF5_9FIRM
Trypsin {ECO:0000313|EMBL:CDB17898.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
L2_013_122G1_scaffold_157_18
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20248..22260)
DNA (2013bp) protein (671aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EVV5_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EEG36598.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
heat shock protein 90
L2_013_122G1_scaffold_157_19
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22563..23981)
DNA (1419bp) protein (473aa)
Amino acid carrier protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EVB0_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EEG36765.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
amino acid carrier protein
L2_013_122G1_scaffold_157_20
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24425..25852
DNA (1428bp) protein (476aa)
Glutamine synthetase, type I {ECO:0000313|EMBL:EEG55640.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EEG55640.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
glutamate--ammonia ligase (EC:6.3.1.2)
Glutamine synthetase, type I n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CZ58_9CLOT
L2_013_122G1_scaffold_157_21
Pseudoramibacter alactolyticus, Pseudoramibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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26220..27359
DNA (1140bp) protein (380aa)
Acyl-CoA dehydrogenase, C-terminal domain protein n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MJ04_9FIRM
Acyl-CoA dehydrogenase, C-terminal domain protein {ECO:0000313|EMBL:EFV00956.1}; TaxID=887929 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Pseudoramibacter.;" source="Pseudoramibacter alactolyticus ATCC 23263.;"
acyl-CoA dehydrogenase
L2_013_122G1_scaffold_157_22
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27440..28246
DNA (807bp) protein (269aa)
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R1D0_CLOSW
electron transfer flavoprotein subunit alpha/beta
Electron transfer flavoprotein alpha/beta-subunit {ECO:0000313|EMBL:ADL06453.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L2_013_122G1_scaffold_157_23
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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28260..29267
DNA (1008bp) protein (336aa)
electron transfer flavoprotein subunit alpha n=1 Tax=Clostridium sporosphaeroides RepID=UPI000382EB59
electron transfer flavoprotein subunit alpha
Tax=BJP_IG2069_Clostridiales_48_15
L2_013_122G1_scaffold_157_24
Clostridium sp. SY8519, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29360..30511
DNA (1152bp) protein (384aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. (strain SY8519) RepID=F7V7U1_CLOSS
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK46201.1}; TaxID=1042156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain SY8519).;"
L2_013_122G1_scaffold_157_25
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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30840..32369
DNA (1530bp) protein (510aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AYD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81462.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L2_013_122G1_scaffold_157_26
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32596..34587
DNA (1992bp) protein (664aa)
UvrABC system protein B n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EVV1_9FIRM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
excinuclease ABC, B subunit
L2_013_122G1_scaffold_157_27
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34800..37631
DNA (2832bp) protein (944aa)
UvrABC system protein A n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GA26_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
excinuclease ABC, A subunit
L2_013_122G1_scaffold_157_28
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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37866..39128
DNA (1263bp) protein (421aa)
GTPase HflX n=2 Tax=Eubacterium RepID=C0EUG4_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
GTP-binding protein
L2_013_122G1_scaffold_157_29
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39243..39503
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2Q0G5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66182.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L2_013_122G1_scaffold_157_30
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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39493..40980
DNA (1488bp) protein (496aa)
Sodium/pantothenate symporter n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R760_9FIRM
Sodium/pantothenate symporter {ECO:0000313|EMBL:ERK49448.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
Displaying items 1-30 of 90 in total

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