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L2_013_245G1_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 391 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_0_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(132..827)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U6U2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66851.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Ribosomal protein S1
L2_013_245G1_scaffold_0_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1048..2700
DNA (1653bp) protein (551aa)
Inorganic pyrophosphatase/exopolyphosphatase (EC:3.6.1.1)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMC7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66850.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_013_245G1_scaffold_0_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2713..3306
DNA (594bp) protein (198aa)
Flavin reductase-like protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TU88_9FIRM
Flavin reductase-like protein {ECO:0000313|EMBL:CCZ66849.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L2_013_245G1_scaffold_0_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3397..4887)
DNA (1491bp) protein (497aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=3 Tax=Lachnospiraceae RepID=A7AYN5_RUMGN
L2_013_245G1_scaffold_0_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4906..6081)
DNA (1176bp) protein (392aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
galactokinase (EC:2.7.1.6)
Galactokinase n=3 Tax=Lachnospiraceae RepID=A7AYN4_RUMGN
L2_013_245G1_scaffold_0_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6216..7073
DNA (858bp) protein (286aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMB9_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ66845.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcriptional regulator, AraC family
L2_013_245G1_scaffold_0_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7144..7827
DNA (684bp) protein (228aa)
Polysaccharide deacetylase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TU84_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:CCZ66844.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted xylanase/chitin deacetylase
L2_013_245G1_scaffold_0_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7848..8561
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TM59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66843.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1
L2_013_245G1_scaffold_0_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8591..9907
DNA (1317bp) protein (439aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8C0L4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49893.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ATPase related to the helicase subunit of the Holliday junction resolvase
L2_013_245G1_scaffold_0_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9884..10396)
DNA (513bp) protein (171aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TM37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49892.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_013_245G1_scaffold_0_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10389..11312)
DNA (924bp) protein (308aa)
TIGR01212 family radical SAM protein n=3 Tax=Clostridiales RepID=F7JSI5_9FIRM
TIGR01212 family radical SAM protein {ECO:0000313|EMBL:EGN49891.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
radical SAM protein, TIGR01212 family
L2_013_245G1_scaffold_0_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11315..12463)
DNA (1149bp) protein (383aa)
Malic enzyme (EC:1.1.1.38)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5U6Q0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49890.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_013_245G1_scaffold_0_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12704..14041
DNA (1338bp) protein (446aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Transcription termination factor Rho n=3 Tax=Lachnospiraceae RepID=A7AYM6_RUMGN
transcription termination factor Rho
L2_013_245G1_scaffold_0_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14182..14964
DNA (783bp) protein (261aa)
Formate/nitrite transporter n=4 Tax=Clostridiales RepID=A7AYM5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20617.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
formate/nitrite family of transporter
L2_013_245G1_scaffold_0_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15092..15292
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=6 Tax=Clostridiales RepID=R6F565_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
RpmE; 50S ribosomal protein L31
L2_013_245G1_scaffold_0_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15366..16337
DNA (972bp) protein (324aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7AYM3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49886.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted metal-dependent enzyme
L2_013_245G1_scaffold_0_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16334..17185
DNA (852bp) protein (284aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Release factor glutamine methyltransferase n=2 Tax=Lachnospiraceae RepID=F7JSH9_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L2_013_245G1_scaffold_0_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17215..18285
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 n=3 Tax=Clostridiales RepID=F7JSH8_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
bacterial peptide chain release factor 1 (bRF-1)
L2_013_245G1_scaffold_0_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18493..18627
DNA (135bp) protein (45aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TM77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49883.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_013_245G1_scaffold_0_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18684..18887
DNA (204bp) protein (68aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7AYM0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49882.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_013_245G1_scaffold_0_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19233..19784
DNA (552bp) protein (184aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYL6_RUMGN
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EDN79180.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L2_013_245G1_scaffold_0_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20248..21150
DNA (903bp) protein (301aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BZR0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49880.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_013_245G1_scaffold_0_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21178..22395
DNA (1218bp) protein (406aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1)
Aminotransferase, class I/II n=3 Tax=Lachnospiraceae RepID=A7AYL3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20608.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L2_013_245G1_scaffold_0_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22373..23455
DNA (1083bp) protein (361aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=3 Tax=Clostridiales RepID=F7JSH2_9FIRM
L2_013_245G1_scaffold_0_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23449..24297
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68562.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted membrane protein
L2_013_245G1_scaffold_0_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24329..24676)
DNA (348bp) protein (116aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TS32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49876.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted transcriptional regulator
L2_013_245G1_scaffold_0_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24863..25315
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TYZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68564.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_013_245G1_scaffold_0_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25408..26469
DNA (1062bp) protein (354aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TS66_9FIRM
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L2_013_245G1_scaffold_0_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26457..30968
DNA (4512bp) protein (1504aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA polymerase III polC-type n=2 Tax=Lachnospiraceae RepID=F7JSG8_9FIRM
DNA polymerase III subunit alpha
L2_013_245G1_scaffold_0_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31001..32293
DNA (1293bp) protein (431aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYK5_RUMGN
Displaying items 1-30 of 391 in total

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