ggKbase home page

L2_013_245G1_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 324 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_4_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..811
DNA (810bp) protein (270aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EEA83887.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EEA83887.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJA5_9CLOT
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase./Putative cell wall binding repeat.
L2_013_245G1_scaffold_4_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

968..2908
DNA (1941bp) protein (647aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFA0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22260.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted nucleoside-diphosphate sugar epimerases
L2_013_245G1_scaffold_4_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2911..4113
DNA (1203bp) protein (401aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=2 Tax=Clostridium RepID=B6FJA3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22259.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
L2_013_245G1_scaffold_4_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4128..4808
DNA (681bp) protein (227aa)
Bacterial sugar transferase n=2 Tax=Clostridium RepID=B6FJA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22258.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Sugar transferases involved in lipopolysaccharide synthesis
L2_013_245G1_scaffold_4_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4827..6074
DNA (1248bp) protein (416aa)
Glycosyltransferase, group 1 family protein n=2 Tax=Clostridium RepID=B6FJA1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22257.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_4_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6074..7186
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUS1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22256.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_4_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7183..8298
DNA (1116bp) protein (372aa)
Glycosyltransferase, group 1 family protein n=2 Tax=Clostridium RepID=B6FJ99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22255.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_4_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8311..9624
DNA (1314bp) protein (438aa)
Nucleotide sugar dehydrogenase n=2 Tax=Clostridium RepID=B6FJ98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22254.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_4_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9636..10715
DNA (1080bp) protein (360aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EEA83879.1}; EC=5.1.3.14 {ECO:0000313|EMBL:EEA83879.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
UDP-N-acetylglucosamine 2-epimerase n=2 Tax=Clostridium RepID=B6FJ97_9CLOT
hypothetical protein
L2_013_245G1_scaffold_4_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10735..11808
DNA (1074bp) protein (358aa)
Oxidoreductase, NAD-binding domain protein n=2 Tax=Clostridium RepID=B6FJ94_9CLOT
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EEA83876.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_245G1_scaffold_4_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11810..12385
DNA (576bp) protein (192aa)
Bacterial transferase hexapeptide repeat protein n=2 Tax=Clostridium RepID=B6FJ93_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22249.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
acetyltransferase
L2_013_245G1_scaffold_4_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12389..13525
DNA (1137bp) protein (379aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=2 Tax=Clostridium RepID=B6FJ92_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22248.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
aminotransferase DegT
L2_013_245G1_scaffold_4_13
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13537..14640
DNA (1104bp) protein (368aa)
Leucine rich repeat protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0M6_9FIRM
Leucine rich repeat protein {ECO:0000313|EMBL:CDC14249.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
putative internalin
L2_013_245G1_scaffold_4_14
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14652..16031
DNA (1380bp) protein (460aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSQ8_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDC14250.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L2_013_245G1_scaffold_4_15
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16016..17293
DNA (1278bp) protein (426aa)
Polysaccharide biosynthesis protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P6W0_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDC14251.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
putative membrane protein
L2_013_245G1_scaffold_4_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17373..18383
DNA (1011bp) protein (337aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EEA83871.1}; EC=2.4.-.- {ECO:0000313|EMBL:EEA83871.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Glycosyltransferase, group 2 family protein n=2 Tax=Clostridium RepID=B6FJ89_9CLOT
Glycosyltransferases, probably involved in cell wall biogenesis
L2_013_245G1_scaffold_4_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18406..19914
DNA (1509bp) protein (503aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJ85_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22244.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_4_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20091..21188
DNA (1098bp) protein (366aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=R6QJW1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22242.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glycosyl transferase family 1
L2_013_245G1_scaffold_4_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21191..22291
DNA (1101bp) protein (367aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EEA83921.1}; EC=2.4.-.- {ECO:0000313|EMBL:EEA83921.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Glycosyltransferase, group 1 family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ79_9CLOT
glycosyl transferases group 1 family protein
L2_013_245G1_scaffold_4_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22310..23275
DNA (966bp) protein (322aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EEA83920.1}; EC=2.4.-.- {ECO:0000313|EMBL:EEA83920.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Glycosyltransferase, group 2 family protein n=2 Tax=Clostridium RepID=B6FJ78_9CLOT
glycosyl transferase family 2
L2_013_245G1_scaffold_4_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23276..24181
DNA (906bp) protein (302aa)
Core-2/I-Branching enzyme n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ77_9CLOT
Core-2/I-Branching enzyme {ECO:0000313|EMBL:EEA83919.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glycosyl transferase
L2_013_245G1_scaffold_4_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24171..25685
DNA (1515bp) protein (505aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJ76_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22503.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_4_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25705..26619
DNA (915bp) protein (305aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EEA83917.1}; EC=2.4.-.- {ECO:0000313|EMBL:EEA83917.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Glycosyltransferase, group 2 family protein n=2 Tax=Clostridium RepID=B6FJ75_9CLOT
Glycosyltransferases involved in cell wall biogenesis
L2_013_245G1_scaffold_4_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26638..27030
DNA (393bp) protein (131aa)
GtrA-like protein n=2 Tax=Clostridium RepID=B6FJ74_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22501.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
GtrA family protein
L2_013_245G1_scaffold_4_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27038..28657
DNA (1620bp) protein (540aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJ73_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83915.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_245G1_scaffold_4_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28687..30099
DNA (1413bp) protein (471aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJ72_9CLOT
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EEA83914.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_245G1_scaffold_4_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30156..31226
DNA (1071bp) protein (357aa)
Cell envelope-like function transcriptional attenuator common domain protein n=2 Tax=Clostridium RepID=B6FJ71_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22498.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_4_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31332..32900
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QKM6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22497.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_4_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33031..34857
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=2 Tax=Clostridium RepID=B6FJ69_9CLOT
L2_013_245G1_scaffold_4_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34949..36442
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PG12_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22495.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Displaying items 1-30 of 324 in total

View Taxonomy