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L2_013_245G1_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_34_1
unknown

Not on your lists

comp(1..93)
DNA (93bp) protein (31aa)

This feature has no annotations

L2_013_245G1_scaffold_34_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

236..772
DNA (537bp) protein (179aa)
Nitroreductase family protein n=2 Tax=Clostridium RepID=B6FMR7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22965.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Nitroreductase
L2_013_245G1_scaffold_34_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

787..1707
DNA (921bp) protein (307aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PWY5_9CLOT
L2_013_245G1_scaffold_34_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1742..2179
DNA (438bp) protein (146aa)
Aspartate carbamoyltransferase regulatory chain, allosteric domain protein {ECO:0000313|EMBL:EEA82654.1}; EC=2.1.3.2 {ECO:0000313|EMBL:EEA82654.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Aspartate carbamoyltransferase regulatory chain, allosteric domain protein n=2 Tax=Clostridium RepID=B6FMR5_9CLOT
Aspartate carbamoyltransferase, regulatory subunit
L2_013_245G1_scaffold_34_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2246..2515)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF72_9CLOT">RepID=R6PF72_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22968.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_34_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3091..3567)
DNA (477bp) protein (159aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Ribonuclease HI (EC:3.1.26.4)
Ribonuclease H n=2 Tax=Clostridium RepID=B6FMR3_9CLOT
L2_013_245G1_scaffold_34_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3584..5278)
DNA (1695bp) protein (565aa)
MutS domain V protein n=2 Tax=Clostridium RepID=B6FMR2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22970.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA mismatch repair protein MutS domain-containing protein
L2_013_245G1_scaffold_34_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5260..5976)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FMR1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82650.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_245G1_scaffold_34_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5977..6420)
DNA (444bp) protein (148aa)
MOSC domain protein n=2 Tax=Clostridium RepID=B6FMR0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22972.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_34_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6427..7452)
DNA (1026bp) protein (342aa)
Molybdopterin binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FMQ9_9CLOT
Molybdopterin binding domain protein {ECO:0000313|EMBL:EEA82648.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
moeA2; molybdopterin biosynthesis protein MoeA
L2_013_245G1_scaffold_34_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7456..8436)
DNA (981bp) protein (327aa)
Molybdenum cofactor biosynthesis protein C n=2 Tax=Clostridium RepID=B6FMQ8_9CLOT
Molybdenum cofactor biosynthesis protein C {ECO:0000313|EMBL:CDC22974.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor biosynthesis protein B
L2_013_245G1_scaffold_34_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8448..9476)
DNA (1029bp) protein (343aa)
ltaE; Low specificity L-threonine aldolase LtaE (EC:4.1.2.5)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PHD8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22975.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_34_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9594..11066)
DNA (1473bp) protein (491aa)
Stage IV sporulation protein A n=2 Tax=Clostridium RepID=B6FMQ6_9CLOT
Stage IV sporulation protein A {ECO:0000313|EMBL:EEA82645.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
stage IV sporulation protein A
L2_013_245G1_scaffold_34_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11150..12160)
DNA (1011bp) protein (337aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=2 Tax=Clostridium RepID=B6FMQ5_9CLOT
L2_013_245G1_scaffold_34_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12178..12819)
DNA (642bp) protein (214aa)
Glycerol-3-phosphate acyltransferase n=2 Tax=Clostridium RepID=B6FMQ4_9CLOT
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
acyl-phosphate glycerol-3-phosphate acyltransferase
L2_013_245G1_scaffold_34_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12824..14152)
DNA (1329bp) protein (443aa)
GTPase Der n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQC9_9CLOT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ribosome-associated GTPase EngA
L2_013_245G1_scaffold_34_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14308..15486
DNA (1179bp) protein (393aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=2 Tax=Clostridium RepID=B6FMQ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22980.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_34_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15533..16963)
DNA (1431bp) protein (477aa)
Polysaccharide deacetylase n=2 Tax=Clostridium RepID=B6FMQ1_9CLOT
Polysaccharide deacetylase {ECO:0000313|EMBL:EEA82640.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted xylanase/chitin deacetylase
L2_013_245G1_scaffold_34_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17141..18304)
DNA (1164bp) protein (388aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EEA82639.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EEA82639.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FMQ0_9CLOT
L2_013_245G1_scaffold_34_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18307..19389)
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FMP9_9CLOT
L2_013_245G1_scaffold_34_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19412..21088)
DNA (1677bp) protein (559aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=2 Tax=Clostridium RepID=B6FMP8_9CLOT
L2_013_245G1_scaffold_34_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21107..22774)
DNA (1668bp) protein (556aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PHF3_9CLOT
L2_013_245G1_scaffold_34_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22792..23877)
DNA (1086bp) protein (362aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FMP6_9CLOT
L2_013_245G1_scaffold_34_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24034..24315)
DNA (282bp) protein (94aa)
Preprotein translocase, YajC subunit n=2 Tax=Clostridium RepID=B6FMP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22987.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
preprotein translocase, YajC subunit
L2_013_245G1_scaffold_34_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24406..25539)
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FR80_9CLOT
L2_013_245G1_scaffold_34_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25558..27198)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQE1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22989.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family
L2_013_245G1_scaffold_34_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27449..27988
DNA (540bp) protein (180aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FR82_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA81461.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
XRE family transcriptional regulator
L2_013_245G1_scaffold_34_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28006..29079
DNA (1074bp) protein (358aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type spermidine/putrescine transport systems, ATPase components (EC:3.6.3.31)
Polyamine ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FR83_9CLOT
L2_013_245G1_scaffold_34_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29069..29887
DNA (819bp) protein (273aa)
ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FR84_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22992.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
binding-protein-dependent transport system inner membrane protein
L2_013_245G1_scaffold_34_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29887..31791
DNA (1905bp) protein (635aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=R6PFA1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22993.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Spermidine/putrescine-binding periplasmic protein
Displaying items 1-30 of 178 in total

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