ggKbase home page

L2_013_245G1_scaffold_58

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_58_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..237)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67819.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_013_245G1_scaffold_58_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(234..446)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQ60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67820.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_013_245G1_scaffold_58_3
[Eubacterium] cellulosolvens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

661..870
DNA (210bp) protein (70aa)
Transposase n=1 Tax=Eubacterium cellulosolvens 6 RepID=I5AXR0_EUBCE
Transposase {ECO:0000313|EMBL:EIM58583.1}; TaxID=633697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] cellulosolvens 6.;"
transposase
L2_013_245G1_scaffold_58_4
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1814..2242
DNA (429bp) protein (143aa)
DNA-binding helix-turn-helix protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NG27_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDC11063.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
Phage transcriptional regulator, Cro/CI family protein
L2_013_245G1_scaffold_58_5
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2389..3237
DNA (849bp) protein (283aa)
Uncharacterized protein n=2 Tax=Streptococcus anginosus RepID=S6B817_STRAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EID23452.1}; TaxID=1095729 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus anginosus subsp. whileyi CCUG 39159.;"
L2_013_245G1_scaffold_58_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3374..3919
DNA (546bp) protein (182aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BZF8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48529.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Uncharacterized protein conserved in cyanobacteria
L2_013_245G1_scaffold_58_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4096..4260
DNA (165bp) protein (55aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BYG0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48530.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Phage integrase family.
L2_013_245G1_scaffold_58_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4257..4757
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BYG0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48530.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Phage integrase family.
L2_013_245G1_scaffold_58_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4744..5001
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BYG0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20154.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Phage integrase family.
L2_013_245G1_scaffold_58_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5253..6347
DNA (1095bp) protein (365aa)
Transcriptional regulator, AraC family n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B8J0_RUMGN
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDN75760.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
AraC family transcriptional regulator
L2_013_245G1_scaffold_58_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6515..8461
DNA (1947bp) protein (649aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BPE2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16690.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L2_013_245G1_scaffold_58_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8518..9387)
DNA (870bp) protein (290aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TP81_9FIRM
L2_013_245G1_scaffold_58_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9424..10092)
DNA (669bp) protein (223aa)
Phosphatidylserine synthase (EC:2.7.8.8)
CDP-alcohol phosphatidyltransferase n=4 Tax=Clostridiales RepID=A7B8I7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49318.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_013_245G1_scaffold_58_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10089..11150)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TPK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49319.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_013_245G1_scaffold_58_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11140..11850)
DNA (711bp) protein (237aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BNI6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49320.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PAP2 superfamily.
L2_013_245G1_scaffold_58_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12069..14159)
DNA (2091bp) protein (697aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=4 Tax=Clostridiales RepID=A7B8B9_RUMGN
L2_013_245G1_scaffold_58_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14379..14645)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=4 Tax=Clostridiales RepID=A7B8B8_RUMGN
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
SSU ribosomal protein S15P
L2_013_245G1_scaffold_58_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14772..16079)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TW81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49324.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
putative glycosyl hydrolase
L2_013_245G1_scaffold_58_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16082..17341)
DNA (1260bp) protein (420aa)
Oxidoreductase, NAD-binding domain protein n=4 Tax=Clostridiales RepID=A7B8B6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16698.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
oxidoreductase
L2_013_245G1_scaffold_58_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17357..18220)
DNA (864bp) protein (288aa)
ABC transporter, permease protein n=4 Tax=Clostridiales RepID=A7B8B5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49326.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
sugar ABC transporter permease
L2_013_245G1_scaffold_58_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18220..19140)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67562.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
putative ABC-type sugar transport system, permease component
L2_013_245G1_scaffold_58_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19229..20554)
DNA (1326bp) protein (442aa)
ABC transporter, solute-binding protein n=4 Tax=Clostridiales RepID=A7B8B3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49328.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC transporter binding protein
L2_013_245G1_scaffold_58_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20780..22036)
DNA (1257bp) protein (419aa)
ABC transporter, solute-binding protein n=4 Tax=Clostridiales RepID=A7B8B2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49329.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
extracellular solute-binding protein
L2_013_245G1_scaffold_58_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22033..23103)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TPL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49330.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
chemotaxis protein CheY
L2_013_245G1_scaffold_58_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23091..24839)
DNA (1749bp) protein (583aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=4 Tax=Clostridiales RepID=A7B8B0_RUMGN
helicase Ski2
L2_013_245G1_scaffold_58_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24848..25747)
DNA (900bp) protein (300aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein RibF n=4 Tax=Clostridiales RepID=A7B8A9_RUMGN
L2_013_245G1_scaffold_58_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25750..26670)
DNA (921bp) protein (307aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=4 Tax=Clostridiales RepID=A7B8A8_RUMGN
L2_013_245G1_scaffold_58_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26692..27651)
DNA (960bp) protein (320aa)
DHHA1 domain protein n=4 Tax=Clostridiales RepID=A7B8A7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16707.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Exopolyphosphatase-related proteins
L2_013_245G1_scaffold_58_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27658..28029)
DNA (372bp) protein (124aa)
Ribosome-binding factor A n=2 Tax=Lachnospiraceae RepID=F7JUK8_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ribosome-binding factor A
L2_013_245G1_scaffold_58_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28039..30606)
DNA (2568bp) protein (856aa)
Translation initiation factor IF-2 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U8V8_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
bacterial translation initiation factor 2 (bIF-2)
Displaying items 1-30 of 104 in total

View Taxonomy