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L2_013_245G1_scaffold_95

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_95_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

119..871
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PGI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23463.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transposase for insertion sequence element IS801
L2_013_245G1_scaffold_95_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

868..1014
DNA (147bp) protein (49aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PGI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23463.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_95_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1236..2837)
DNA (1602bp) protein (534aa)
Type I restriction-modification system, M subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=D6MGB2_9CLOT
Type I restriction-modification protein subunit M {ECO:0000313|EMBL:KHD17169.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
type I restriction-modification system, M subunit
L2_013_245G1_scaffold_95_4
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2865..4016)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=B9E4C7_CLOK1
Type I restriction enzyme, specificity subunit
Type I restriction enzyme, specificity subunit {ECO:0000313|EMBL:AKA70472.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L2_013_245G1_scaffold_95_5
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4009..5013)
DNA (1005bp) protein (335aa)
Toxin Fic n=1 Tax=Carnobacterium sp. WN1359 RepID=U5SFL2_9LACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKA70473.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L2_013_245G1_scaffold_95_6
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5026..8244)
DNA (3219bp) protein (1073aa)
Type I restriction-modification system restriction subunit HsdR2 {ECO:0000313|EMBL:AFA48491.1}; EC=3.1.21.3 {ECO:0000313|EMBL:AFA48491.1};; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
hsdR2; type I restriction-modification system restriction subunit HsdR2 (EC:3.1.21.3)
Type I restriction-modification system restriction subunit HsdR2 n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LHW1_ACEWD
L2_013_245G1_scaffold_95_7
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8225..8815)
DNA (591bp) protein (197aa)
hsdA; type I restriction-modification system methylase subunit HsdA (EC:3.1.21.3)
Type I restriction-modification system methylase subunit HsdA n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LHW0_ACEWD
Restriction endonuclease S subunits {ECO:0000313|EMBL:CDL90891.1}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
L2_013_245G1_scaffold_95_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9018..9347
DNA (330bp) protein (110aa)
Transcriptional regulator, PadR family n=2 Tax=Clostridium RepID=B6FTU8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23370.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, PadR family
L2_013_245G1_scaffold_95_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9354..10676
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PY40_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23371.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Bacterial cell division membrane protein
L2_013_245G1_scaffold_95_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10692..13199)
DNA (2508bp) protein (836aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QN35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23372.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_95_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13203..14351)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FTV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80554.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_245G1_scaffold_95_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14480..17035)
DNA (2556bp) protein (852aa)
Histidine kinase A domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTV2_9CLOT
Histidine kinase A domain protein {ECO:0000313|EMBL:EEA80555.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Signal transduction histidine kinase
L2_013_245G1_scaffold_95_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17048..17743)
DNA (696bp) protein (232aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FTV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23375.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_013_245G1_scaffold_95_14
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17867..18661)
DNA (795bp) protein (265aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BD91_9FIRM
L2_013_245G1_scaffold_95_15
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18682..21054)
DNA (2373bp) protein (791aa)
Pyruvate-formate lyase (EC:2.3.1.54)
Pyruvate formate-lyase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BD88_9FIRM
Pyruvate formate-lyase {ECO:0000313|EMBL:EGG80872.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
L2_013_245G1_scaffold_95_16
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21059..21970)
DNA (912bp) protein (304aa)
Glycyl-radical enzyme activating protein family n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BD87_9FIRM
Glycyl-radical enzyme activating protein family {ECO:0000313|EMBL:EGG80871.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
glycyl-radical enzyme activating family protein
L2_013_245G1_scaffold_95_17
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22148..22720
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BD86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG80870.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
DNA-binding protein
L2_013_245G1_scaffold_95_18
Oribacterium sp. oral taxon 078, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23536..24024)
DNA (489bp) protein (163aa)
Acetyltransferase, GNAT family n=1 Tax=Oribacterium sp. oral taxon 078 str. F0262 RepID=D4CKV8_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFE91969.1}; TaxID=608534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 078 str. F0262.;"
acetyltransferase
L2_013_245G1_scaffold_95_19
unknown

Not on your lists

comp(24432..24701)
DNA (270bp) protein (90aa)
hypothetical protein
L2_013_245G1_scaffold_95_20
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24979..25071
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U6S4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD54956.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L2_013_245G1_scaffold_95_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25304..26650)
DNA (1347bp) protein (449aa)
MATE domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTV5_9CLOT
MATE domain protein {ECO:0000313|EMBL:EEA80558.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Na+-driven multidrug efflux pump
L2_013_245G1_scaffold_95_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26749..27519
DNA (771bp) protein (257aa)
Transcriptional regulator, MerR family n=2 Tax=Clostridium RepID=B6FTV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22854.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted transcriptional regulators
L2_013_245G1_scaffold_95_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27513..28721
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PES8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22853.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sodium/proton antiporter, CPA1 family (TC 2.A.36)
L2_013_245G1_scaffold_95_24
unknown

Not on your lists

comp(28765..28866)
DNA (102bp) protein (34aa)

This feature has no annotations

L2_013_245G1_scaffold_95_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29130..30071)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QN39_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23377.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Lysophospholipase
L2_013_245G1_scaffold_95_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30084..31460)
DNA (1377bp) protein (459aa)
Citrate synthase (EC:2.3.3.5 2.3.3.1)
Citrate synthase n=2 Tax=Clostridium RepID=B6FTV9_9CLOT
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_95_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31593..32273)
DNA (681bp) protein (227aa)
TIGR00266 family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTW0_9CLOT
TIGR00266 family protein {ECO:0000313|EMBL:EEA80563.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein TIGR00266
L2_013_245G1_scaffold_95_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(32296..33168)
DNA (873bp) protein (291aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTW1_9CLOT
L2_013_245G1_scaffold_95_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33178..33948)
DNA (771bp) protein (257aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase, TatD family n=2 Tax=Clostridium RepID=B6FTW2_9CLOT
Hydrolase, TatD family {ECO:0000313|EMBL:EEA80565.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_013_245G1_scaffold_95_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33950..34936)
DNA (987bp) protein (329aa)
diaminopimelate dehydrogenase (EC:1.4.1.16)
Diaminopimelate dehydrogenase n=2 Tax=Clostridium RepID=B6FTW3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23382.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Displaying items 1-30 of 70 in total

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