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L2_013_245G1_scaffold_158

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_158_1
unknown

Not on your lists

comp(326..457)
DNA (132bp) protein (44aa)

This feature has no annotations

L2_013_245G1_scaffold_158_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(408..1031)
DNA (624bp) protein (208aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FN67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22668.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide
L2_013_245G1_scaffold_158_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1117..2412)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QL25_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22667.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_158_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2415..2759)
DNA (345bp) protein (115aa)
LytTr DNA-binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN65_9CLOT
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EEA82512.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Response regulator of the LytR/AlgR family
L2_013_245G1_scaffold_158_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2792..3028)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3ALH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF38677.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
virR; response regulator, virR
L2_013_245G1_scaffold_158_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3149..3625)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN64_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82511.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Protein of unknown function (DUF1653).
L2_013_245G1_scaffold_158_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3650..4864)
DNA (1215bp) protein (405aa)
threonine dehydratase, medium form (EC:4.3.1.19)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEA4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22663.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_158_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4891..5820)
DNA (930bp) protein (310aa)
Signal recognition particle receptor FtsY n=2 Tax=Clostridium RepID=B6FN62_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
signal recognition particle-docking protein FtsY
L2_013_245G1_scaffold_158_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5832..9392)
DNA (3561bp) protein (1187aa)
Chromosome partition protein Smc n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN61_9CLOT
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
condensin subunit Smc
L2_013_245G1_scaffold_158_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9400..10095)
DNA (696bp) protein (232aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGF1_9CLOT
L2_013_245G1_scaffold_158_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10152..10382)
DNA (231bp) protein (77aa)
Acyl carrier protein n=2 Tax=Clostridium RepID=B6FN59_9CLOT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
acyl carrier protein
L2_013_245G1_scaffold_158_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10412..11437)
DNA (1026bp) protein (342aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phosphate acyltransferase n=2 Tax=Clostridium RepID=B6FN58_9CLOT
phosphate:acyl-[acyl carrier protein] acyltransferase
L2_013_245G1_scaffold_158_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11555..11734)
DNA (180bp) protein (60aa)
50S ribosomal protein L32 n=2 Tax=Clostridium RepID=B6FN57_9CLOT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribosomal protein L32
L2_013_245G1_scaffold_158_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11738..12265)
DNA (528bp) protein (176aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PW11_9CLOT
Putative ACR, COG1399 {ECO:0000313|EMBL:EEA82503.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted metal-binding, possibly nucleic acid-binding protein
L2_013_245G1_scaffold_158_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12343..13533)
DNA (1191bp) protein (397aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=2 Tax=Clostridium RepID=B6FN55_9CLOT
L2_013_245G1_scaffold_158_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13556..14551)
DNA (996bp) protein (332aa)
Phosphate acetyltransferase {ECO:0000313|EMBL:EEA82501.1}; EC=2.3.1.8 {ECO:0000313|EMBL:EEA82501.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase n=2 Tax=Clostridium RepID=B6FN54_9CLOT
L2_013_245G1_scaffold_158_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14700..16031)
DNA (1332bp) protein (444aa)
Magnesium transporter n=2 Tax=Clostridium RepID=B6FN53_9CLOT
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
magnesium transporter
L2_013_245G1_scaffold_158_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16176..17402
DNA (1227bp) protein (409aa)
UPF0348 protein CLONEX_01560 n=2 Tax=Clostridium RepID=B6FN51_9CLOT
UPF0348 protein BN618_00446 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted nucleotidyltransferase
L2_013_245G1_scaffold_158_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17429..18286)
DNA (858bp) protein (286aa)
EDD domain protein, DegV family n=3 Tax=Clostridium RepID=B6FN49_9CLOT
EDD domain protein, DegV family {ECO:0000313|EMBL:EEA82549.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
EDD domain protein, DegV family
L2_013_245G1_scaffold_158_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18306..19718)
DNA (1413bp) protein (471aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FN48_9CLOT
UPF0210 protein BN618_00444 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_158_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19739..20011)
DNA (273bp) protein (91aa)
UPF0237 protein CLONEX_01555 n=2 Tax=Clostridium RepID=B6FN47_9CLOT
UPF0237 protein CLONEX_01555 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ACT domain-containing protein
L2_013_245G1_scaffold_158_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20028..20825)
DNA (798bp) protein (266aa)
Metallo-beta-lactamase domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN46_9CLOT
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEA82546.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Metal-dependent hydrolases of the beta-lactamase superfamily I
L2_013_245G1_scaffold_158_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20822..21424)
DNA (603bp) protein (201aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=2 Tax=Clostridium RepID=B6FN45_9CLOT
L2_013_245G1_scaffold_158_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21424..24042)
DNA (2619bp) protein (873aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=2 Tax=Clostridium RepID=B6FN44_9CLOT
L2_013_245G1_scaffold_158_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24084..24536)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGE1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22645.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_158_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24526..25071)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PP98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82542.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_245G1_scaffold_158_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25089..26192)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PE84_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22643.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
aldo/keto reductase
L2_013_245G1_scaffold_158_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26257..27972)
DNA (1716bp) protein (572aa)
Asparagine synthetase n=1 Tax=Clostridium nexile CAG:348 RepID=R6QL03_9CLOT
Asparagine synthetase {ECO:0000313|EMBL:CDC22642.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
asparagine synthase
L2_013_245G1_scaffold_158_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28068..29759)
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PW00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22641.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L2_013_245G1_scaffold_158_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29904..30137)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGD8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22640.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Displaying items 1-30 of 84 in total

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