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L2_013_245G1_scaffold_260

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_260_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1056)
DNA (1056bp) protein (352aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7A3_9FIRM
pilM; type IV pilus assembly protein PilM
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:CCO05977.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1159..2355)
DNA (1197bp) protein (399aa)
Type II secretion system protein F domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFL9_9FIRM
pilC; putative type IV pilus assembly protein PilC
Putative type IV pilus assembly protein PilC {ECO:0000313|EMBL:CCO05976.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2643..3209)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66685.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L2_013_245G1_scaffold_260_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3297..5333)
DNA (2037bp) protein (679aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CCO05974.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCO05974.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAH5_9FIRM
L2_013_245G1_scaffold_260_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5515..7143)
DNA (1629bp) protein (543aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
CTP synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Z1_9FIRM
L2_013_245G1_scaffold_260_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7508..8890
DNA (1383bp) protein (461aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA34_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:CDC66539.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
cell envelope-related transcriptional regulator
L2_013_245G1_scaffold_260_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9055..9384
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZG3_9FIRM
csoR; Possible Copper-sensing transcriptional repressor CsoR
Possible Copper-sensing transcriptional repressor CsoR {ECO:0000313|EMBL:CCO05971.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9399..11921
DNA (2523bp) protein (841aa)
copA; Cu2+-exporting ATPase (EC:3.6.3.4)
Cu2+-exporting ATPase {ECO:0000313|EMBL:CCO05970.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CCO05970.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Copper-exporting ATPase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Z1_9FIRM
L2_013_245G1_scaffold_260_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12011..14488)
DNA (2478bp) protein (826aa)
Two-component system sensor histidine kinase (EC:2.7.3.-)
Histidine kinase A domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFA7_9FIRM
Histidine kinase A domain protein {ECO:0000313|EMBL:CDC66536.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_245G1_scaffold_260_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14463..15170)
DNA (708bp) protein (236aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y6_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDC66535.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Two-component system transcriptional regulator
L2_013_245G1_scaffold_260_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15348..16775)
DNA (1428bp) protein (476aa)
ABC transporter solute-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA29_9FIRM
extracellular solute-binding protein
Extracellular solute-binding protein {ECO:0000313|EMBL:CCO05967.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17013..18473)
DNA (1461bp) protein (487aa)
Amino acid carrier protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZG0_9FIRM
agcS; alanine and/or glycine in symporter (with Na+ and or H+)
Alanine and/or glycine in symporter (With Na+ and or H+) {ECO:0000313|EMBL:CCO05966.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18561..19556)
DNA (996bp) protein (332aa)
Putative catabolite control protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Z0_9FIRM
Transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CCO05965.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19769..20050
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFA4_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05964.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20121..21131)
DNA (1011bp) protein (337aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05963.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21340..22428)
DNA (1089bp) protein (363aa)
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:CCO05962.1};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Aspartate carbamoyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA25_9FIRM
L2_013_245G1_scaffold_260_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22538..23209)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66528.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_013_245G1_scaffold_260_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23206..23610)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZF7_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC66528.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_245G1_scaffold_260_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23631..24977)
DNA (1347bp) protein (449aa)
MBOAT family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Y5_9FIRM
MBOAT family protein {ECO:0000313|EMBL:CDC66527.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative alginate O-acetyltransferase
L2_013_245G1_scaffold_260_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25012..25635)
DNA (624bp) protein (208aa)
RNAse M5 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFA0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05959.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25639..26697)
DNA (1059bp) protein (353aa)
holA; DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:CCO05958.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CCO05958.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
DNA polymerase III delta subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y0_9FIRM
L2_013_245G1_scaffold_260_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26666..28666)
DNA (2001bp) protein (667aa)
ComEC/Rec2-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA21_9FIRM
Possible DNA uptake protein {ECO:0000313|EMBL:CCO05957.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
possible DNA uptake protein
L2_013_245G1_scaffold_260_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28727..29068)
DNA (342bp) protein (114aa)
Histidine triad domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZF3_9FIRM
hypothetical protein
Histidine triad domain protein {ECO:0000313|EMBL:CDC66523.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_245G1_scaffold_260_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29131..31788)
DNA (2658bp) protein (886aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Y0_9FIRM
L2_013_245G1_scaffold_260_25
unknown

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comp(31843..32115)
DNA (273bp) protein (91aa)

This feature has no annotations

L2_013_245G1_scaffold_260_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32142..32993
DNA (852bp) protein (284aa)
Putative ribosomal RNA large subunit methyltransferase A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6X4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05953.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32997..33965
DNA (969bp) protein (323aa)
Glycoside Hydrolase Family 113 protein (putative beta-1,4-mannanase) (EC:3.2.1.78)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TF88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66511.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_013_245G1_scaffold_260_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34151..34585)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2W6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05951.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_013_245G1_scaffold_260_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34750..35994)
DNA (1245bp) protein (415aa)
ahcY; Adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Adenosylhomocysteinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA06_9FIRM
L2_013_245G1_scaffold_260_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36395..37795
DNA (1401bp) protein (467aa)
Magnesium transporter n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZE4_9FIRM
mgtE2; Magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 68 in total

View Taxonomy