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L2_013_245G1_scaffold_329

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_329_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(79..564)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PG52_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22515.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_329_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(580..846)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PVN0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22516.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Coenzyme PQQ synthesis protein D (PqqD)
L2_013_245G1_scaffold_329_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(836..1552)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QKQ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22517.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_329_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1607..4294)
DNA (2688bp) protein (896aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDY7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22518.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_329_5
unknown

Not on your lists

comp(4322..4606)
DNA (285bp) protein (95aa)

This feature has no annotations

L2_013_245G1_scaffold_329_6
unknown

Not on your lists

comp(4616..4744)
DNA (129bp) protein (43aa)

This feature has no annotations

L2_013_245G1_scaffold_329_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4961..6268
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PVN4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22521.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Glycosidases
L2_013_245G1_scaffold_329_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6358..6876)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QKR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22522.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_329_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6902..7918)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLW5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82955.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_013_245G1_scaffold_329_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7936..8901)
DNA (966bp) protein (322aa)
Prepilin-type cleavage/methylation N-terminal domain protein n=2 Tax=Clostridium RepID=B6FLW4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22524.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_329_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8891..10753)
DNA (1863bp) protein (621aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted signal transduction protein with a C-terminal ATPase domain (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PG61_9CLOT
L2_013_245G1_scaffold_329_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10743..12356)
DNA (1614bp) protein (538aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PVN7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22526.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
two component transcriptional regulator, AraC family
L2_013_245G1_scaffold_329_13
unknown

Not on your lists

comp(12374..12496)
DNA (123bp) protein (41aa)

This feature has no annotations

L2_013_245G1_scaffold_329_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12480..14135)
DNA (1656bp) protein (552aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLW0_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EEA82987.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L2_013_245G1_scaffold_329_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14154..15662)
DNA (1509bp) protein (503aa)
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FLV9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22528.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_013_245G1_scaffold_329_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15779..17062)
DNA (1284bp) protein (428aa)
Galactose/glucose-binding lipoprotein n=2 Tax=Clostridium RepID=B6FLV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22529.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
galactose/glucose-binding lipoprotein
L2_013_245G1_scaffold_329_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17334..17840)
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FLV7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82984.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_013_245G1_scaffold_329_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17903..19126)
DNA (1224bp) protein (408aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=2 Tax=Clostridium RepID=B6FLV6_9CLOT
L2_013_245G1_scaffold_329_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19496..22078)
DNA (2583bp) protein (861aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QKS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22532.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_013_245G1_scaffold_329_20
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22059..23015)
DNA (957bp) protein (319aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EDS04876.1}; EC=2.4.-.- {ECO:0000313|EMBL:EDS04876.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Glycosyltransferase, group 2 family protein n=2 Tax=Clostridiales RepID=B0NKH2_CLOSV
Glycosyltransferases involved in cell wall biogenesis
L2_013_245G1_scaffold_329_21
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

23154..23855
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RLM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43931.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
yrkP; putative transcriptional regulatory protein YrkP
L2_013_245G1_scaffold_329_22
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23848..25203
DNA (1356bp) protein (452aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MSK9_9FIRM
integral membrane sensor signal transduction histidine kinase
L2_013_245G1_scaffold_329_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25222..28941)
DNA (3720bp) protein (1240aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CGB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD26409.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L2_013_245G1_scaffold_329_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28954..30423)
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CGB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD26409.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L2_013_245G1_scaffold_329_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30695..31807)
DNA (1113bp) protein (371aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=2 Tax=Clostridium RepID=R6PIB9_9CLOT
L2_013_245G1_scaffold_329_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31855..32586)
DNA (732bp) protein (244aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=2 Tax=Clostridium RepID=B6FLH2_9CLOT
L2_013_245G1_scaffold_329_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32791..33618)
DNA (828bp) protein (276aa)
Cof-like hydrolase n=2 Tax=Clostridium RepID=B6FLH1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23313.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cof family hydrolase
L2_013_245G1_scaffold_329_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33642..35321)
DNA (1680bp) protein (560aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QMX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23312.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glycosidase
L2_013_245G1_scaffold_329_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35340..36167)
DNA (828bp) protein (276aa)
PTS system mannose/fructose/sorbose family IID component n=2 Tax=Clostridium RepID=B6FLG8_9CLOT
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EEA83154.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PTS system IID component, Man family (TC 4.A.6)
L2_013_245G1_scaffold_329_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36160..36975)
DNA (816bp) protein (272aa)
PTS system sorbose-specific iic component n=2 Tax=Clostridium RepID=B6FLG7_9CLOT
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EEA83153.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
Displaying items 1-30 of 47 in total

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