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L2_013_245G1_scaffold_220

Search features with annotation key words

Displaying items 1-30 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_220_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(419..1729)
DNA (1311bp) protein (437aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Phosphomethylpyrimidine synthase n=2 Tax=Ruminococcus RepID=C6JFL4_9FIRM
thiamine biosynthesis protein ThiC
L2_013_245G1_scaffold_220_2
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2258..3070)
DNA (813bp) protein (271aa)
Transcriptional regulator, DeoR family n=7 Tax=Clostridium thermocellum RepID=A3DI64_CLOTH
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ABN53643.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L2_013_245G1_scaffold_220_3
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3357..4844
DNA (1488bp) protein (496aa)
Carbohydrate kinase, FGGY-like protein n=6 Tax=Clostridium thermocellum RepID=A3DI65_CLOTH
Carbohydrate kinase, FGGY-like protein
Carbohydrate kinase, FGGY-like protein {ECO:0000313|EMBL:ABN53644.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L2_013_245G1_scaffold_220_4
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4862..5689
DNA (828bp) protein (276aa)
transketolase subunit A (EC:2.2.1.1)
Transketolase domain-containing protein n=7 Tax=Clostridium thermocellum RepID=A3DI66_CLOTH
Transketolase domain-containing protein {ECO:0000313|EMBL:ABN53645.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L2_013_245G1_scaffold_220_5
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5689..6630
DNA (942bp) protein (314aa)
transketolase subunit B (EC:2.2.1.1)
Transketolase domain-containing protein n=7 Tax=Clostridium thermocellum RepID=A3DI67_CLOTH
Transketolase domain-containing protein {ECO:0000313|EMBL:ABN53646.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L2_013_245G1_scaffold_220_6
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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6674..7717
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MHH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS70539.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
alcohol dehydrogenase GroES domain-containing protein
L2_013_245G1_scaffold_220_7
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7784..8839
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5XM32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA05432.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
hypothetical protein
L2_013_245G1_scaffold_220_8
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8829..10328
DNA (1500bp) protein (500aa)
ABC transporter related protein n=1 Tax=Blautia sp. CAG:257 RepID=R5XAK9_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CDA05431.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
ABC transporter
L2_013_245G1_scaffold_220_9
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10346..11338
DNA (993bp) protein (331aa)
Inner-membrane translocator n=1 Tax=Blautia sp. CAG:257 RepID=R5WS68_9FIRM
Inner-membrane translocator {ECO:0000313|EMBL:CDA05430.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
inner-membrane translocator
L2_013_245G1_scaffold_220_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11440..12456)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79790.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_013_245G1_scaffold_220_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12626..12904)
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79789.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Uncharacterised protein family (UPF0150).
L2_013_245G1_scaffold_220_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13078..13893
DNA (816bp) protein (272aa)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase (EC:3.2.2.- 4.2.99.18)
8-oxoguanine DNA-glycosylase (Ogg) n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFL1_9FIRM
8-oxoguanine DNA-glycosylase (Ogg) {ECO:0000313|EMBL:EES76194.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_013_245G1_scaffold_220_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13909..14199
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79785.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_013_245G1_scaffold_220_14
unknown

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14162..14362
DNA (201bp) protein (67aa)

This feature has no annotations

L2_013_245G1_scaffold_220_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14438..15079)
DNA (642bp) protein (214aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJB6_9FIRM
L2_013_245G1_scaffold_220_16
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15213..15920
DNA (708bp) protein (236aa)
Cyclic nucleotide-binding domain protein n=2 Tax=Clostridium RepID=U2D7S7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07739.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
L2_013_245G1_scaffold_220_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15932..17092
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76191.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_013_245G1_scaffold_220_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17352..19619)
DNA (2268bp) protein (756aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
maltodextrin phosphorylase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000304B532
L2_013_245G1_scaffold_220_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19790..20677)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76189.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
AraC-type DNA-binding domain-containing proteins
L2_013_245G1_scaffold_220_20
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20696..21526)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77409.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_013_245G1_scaffold_220_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21510..22442)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77408.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_013_245G1_scaffold_220_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22443..23165)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76186.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Response regulator of the LytR/AlgR family
L2_013_245G1_scaffold_220_23
unknown

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23383..23541
DNA (159bp) protein (53aa)

This feature has no annotations

L2_013_245G1_scaffold_220_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23633..23929)
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77404.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
plasmid stabilization protein RelE/StbE
L2_013_245G1_scaffold_220_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23926..24312)
DNA (387bp) protein (129aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76183.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_013_245G1_scaffold_220_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24639..25622
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002F894E0
Uncharacterized protein {ECO:0000313|EMBL:CDD77402.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_013_245G1_scaffold_220_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25717..26520
DNA (804bp) protein (268aa)
phosphodiesterase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031EDA68
Uncharacterized protein {ECO:0000313|EMBL:CDD77401.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
uncharacterized domain HDIG
L2_013_245G1_scaffold_220_28
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26495..27082
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76180.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted metal-dependent hydrolase
L2_013_245G1_scaffold_220_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27089..28330
DNA (1242bp) protein (414aa)
TIGR00375 family protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFJ6_9FIRM
TIGR00375 family protein {ECO:0000313|EMBL:EES76179.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_013_245G1_scaffold_220_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28336..28794
DNA (459bp) protein (153aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
phosphoesterase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002F286B3
phosphoesterase, MJ0936 family
Displaying items 1-30 of 121 in total

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