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L2_013_245G1_scaffold_739

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_245G1_scaffold_739_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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412..1470
-----------------
DNA (1059bp)
protein (353aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77242.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_013_245G1_scaffold_739_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1715..3241
-----------------
DNA (1527bp)
protein (509aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77241.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_013_245G1_scaffold_739_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3234..4289
-----------------
DNA (1056bp)
protein (352aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBU6_9FIRM
Inner-membrane translocator {ECO:0000313|EMBL:CDD78752.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L2_013_245G1_scaffold_739_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4289..5314
-----------------
DNA (1026bp)
protein (342aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77239.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L2_013_245G1_scaffold_739_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6225..7085
-----------------
DNA (861bp)
protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77238.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted SAM-dependent methyltransferases
L2_013_245G1_scaffold_739_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7116..7979
-----------------
DNA (864bp)
protein (288aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77226.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_013_245G1_scaffold_739_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8160..8345
-----------------
DNA (186bp)
protein (62aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R7CGY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77225.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_013_245G1_scaffold_739_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8568..9881
-----------------
DNA (1314bp)
protein (438aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CIU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77223.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
exopolysaccharide biosynthesis related protein
L2_013_245G1_scaffold_739_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9866..10027)
-----------------
DNA (162bp)
protein (54aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77221.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_013_245G1_scaffold_739_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10962..12248
-----------------
DNA (1287bp)
protein (429aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77233.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transcriptional regulator
L2_013_245G1_scaffold_739_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12361..13740
-----------------
DNA (1380bp)
protein (460aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77232.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_013_245G1_scaffold_739_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13753..14787
-----------------
DNA (1035bp)
protein (345aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CIT9_9FIRM
L2_013_245G1_scaffold_739_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14870..16294
-----------------
DNA (1425bp)
protein (475aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CHK1_9FIRM
L2_013_245G1_scaffold_739_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16603..17199
-----------------
DNA (597bp)
protein (199aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77216.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_013_245G1_scaffold_739_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17334..17609)
-----------------
DNA (276bp)
protein (92aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77215.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_013_245G1_scaffold_739_16
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18152..19507
-----------------
DNA (1356bp)
protein (452aa)
ABC transporter substrate-binding protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000309B983
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EET61221.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ABC transporter substrate-binding protein
L2_013_245G1_scaffold_739_17
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

19707..20600
-----------------
DNA (894bp)
protein (298aa)
ABC transporter permease n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DA9EC5
ABC-type sugar transport system permease component {ECO:0000313|EMBL:CCY21930.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
ABC transporter permease
L2_013_245G1_scaffold_739_18
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

20605..21465
-----------------
DNA (861bp)
protein (287aa)
ABC transporter permease n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002D4AE2B
Putative ABC transporter permease protein ORF2 {ECO:0000313|EMBL:CCY21929.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
ABC transporter permease
L2_013_245G1_scaffold_739_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21776..24034
-----------------
DNA (2259bp)
protein (753aa)
Aconitase A (EC:4.2.1.3)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CG68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77214.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_013_245G1_scaffold_739_20
unknown

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24131..24301
-----------------
DNA (171bp)
protein (57aa)

This feature has no annotations

L2_013_245G1_scaffold_739_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25522..26256
-----------------
DNA (735bp)
protein (245aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.12 5.4.99.-)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77217.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_013_245G1_scaffold_739_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26444..27553
-----------------
DNA (1110bp)
protein (370aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBS1_9FIRM
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:CDD77212.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type sugar transport system, periplasmic component
L2_013_245G1_scaffold_739_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28080..28349
-----------------
DNA (270bp)
protein (90aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77214.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_013_245G1_scaffold_739_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28370..28789
-----------------
DNA (420bp)
protein (140aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBR9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77208.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ATP synthase I chain.
L2_013_245G1_scaffold_739_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28988..29746
-----------------
DNA (759bp)
protein (253aa)
ATP synthase F0 subcomplex A subunit (EC:3.6.3.14)
ATP synthase subunit a n=2 Tax=Ruminococcus RepID=R7CHI8_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_013_245G1_scaffold_739_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29895..30173
-----------------
DNA (279bp)
protein (93aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0, C subunit n=2 Tax=Ruminococcus RepID=C6JBR6_9FIRM
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_013_245G1_scaffold_739_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30218..30790
-----------------
DNA (573bp)
protein (191aa)
ATP synthase F0 subcomplex B subunit (EC:3.6.3.14)
ATP synthase F0, B subunit n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000314A0BE
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_013_245G1_scaffold_739_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30787..31326
-----------------
DNA (540bp)
protein (180aa)
ATP synthase F1 subcomplex delta subunit (EC:3.6.3.14)
ATP synthase F1 subunit delta n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DA6336
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_013_245G1_scaffold_739_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31437..32966
-----------------
DNA (1530bp)
protein (510aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ATP synthase F1 subcomplex alpha subunit (EC:3.6.3.14)
ATP synthase subunit alpha n=2 Tax=Ruminococcus RepID=C6JBR3_9FIRM
L2_013_245G1_scaffold_739_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32987..33844
-----------------
DNA (858bp)
protein (286aa)
ATP synthase F1 subcomplex gamma subunit (EC:3.6.3.14)
F0F1 ATP synthase subunit gamma n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E8E8A1
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Displaying items 1-30 of 37 in total

View Taxonomy