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L2_013_371G1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_371G1_scaffold_56_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..94)
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A5 RepID=R0BYS3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGN44354.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_013_371G1_scaffold_56_2
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(248..640)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A5 RepID=R0C9H7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDD88041.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
L2_013_371G1_scaffold_56_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(802..2538)
DNA (1737bp) protein (579aa)
Peptidase, S8/S53 family {ECO:0000313|EMBL:EDK24492.1}; EC=3.4.21.- {ECO:0000313|EMBL:EDK24492.1};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Peptidase, S8/S53 family n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KLW7_9FIRM
Subtilisin-like serine proteases
L2_013_371G1_scaffold_56_4
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2742..3965)
DNA (1224bp) protein (408aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase n=5 Tax=Clostridiales RepID=A5KLW8_9FIRM
L2_013_371G1_scaffold_56_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4176..5192
DNA (1017bp) protein (339aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EDK24494.1}; EC=2.4.-.- {ECO:0000313|EMBL:EDK24494.1};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Glycosyltransferase, group 2 family protein n=5 Tax=Clostridiales RepID=A5KLW9_9FIRM
Glycosyltransferases involved in cell wall biogenesis
L2_013_371G1_scaffold_56_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5915..6385
DNA (471bp) protein (157aa)
RNA polymerase sigma factor SigX n=4 Tax=Clostridiales RepID=E5XHT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25410.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative RNA polymerase sigma factor
L2_013_371G1_scaffold_56_7
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6378..6833
DNA (456bp) protein (152aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A5KLX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV19135.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L2_013_371G1_scaffold_56_8
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6956..7789)
DNA (834bp) protein (278aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=4 Tax=Clostridiales RepID=E5XHT3_9FIRM
L2_013_371G1_scaffold_56_9
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7889..8836)
DNA (948bp) protein (316aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87048.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Putative GTPases (G3E family)
L2_013_371G1_scaffold_56_10
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8919..10073)
DNA (1155bp) protein (385aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3ATN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87049.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Putative GTPases (G3E family)
L2_013_371G1_scaffold_56_11
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10098..10850)
DNA (753bp) protein (251aa)
exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=5 Tax=Clostridiales RepID=A5KLX6_9FIRM
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:EFV19131.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L2_013_371G1_scaffold_56_12
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10953..11735)
DNA (783bp) protein (261aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=4 Tax=Clostridiales RepID=E5XHS9_9FIRM
L2_013_371G1_scaffold_56_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11744..12193)
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=5 Tax=Clostridiales RepID=A5KLX8_9FIRM
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulator NrdR
L2_013_371G1_scaffold_56_14
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12252..12506)
DNA (255bp) protein (85aa)
Sporulation protein, YlmC/YmxH family n=5 Tax=Clostridiales RepID=A5KLX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87053.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
sporulation protein, YlmC/YmxH family
L2_013_371G1_scaffold_56_15
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12675..13049
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25401.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L2_013_371G1_scaffold_56_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13117..14691
DNA (1575bp) protein (525aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5Q9M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25400.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted integral membrane protein
L2_013_371G1_scaffold_56_17
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14838..15647
DNA (810bp) protein (270aa)
Hemolysin III n=5 Tax=Clostridiales RepID=E5XHS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87056.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
channel protein, hemolysin III family
L2_013_371G1_scaffold_56_18
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15729..16472)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5Q9Y1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25398.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Transcriptional regulators of sugar metabolism
L2_013_371G1_scaffold_56_19
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16703..18619)
DNA (1917bp) protein (639aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=6 Tax=root RepID=A5KLY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25397.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L2_013_371G1_scaffold_56_20
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18851..19759)
DNA (909bp) protein (303aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=5 Tax=Clostridiales RepID=A5KLY7_9FIRM
L2_013_371G1_scaffold_56_21
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20020..20595)
DNA (576bp) protein (192aa)
HD domain protein n=5 Tax=Clostridiales RepID=A5KLY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25395.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
metal dependent phosphohydrolase
L2_013_371G1_scaffold_56_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20784..21515
DNA (732bp) protein (244aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=5 Tax=Clostridiales RepID=A5KLY9_9FIRM
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EFV19120.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L2_013_371G1_scaffold_56_23
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21645..22514
DNA (870bp) protein (290aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5Q9X6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25393.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L2_013_371G1_scaffold_56_24
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22622..22903)
DNA (282bp) protein (94aa)
Putative septation protein SpoVG n=5 Tax=Clostridiales RepID=A5KLZ2_9FIRM
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Uncharacterized protein, involved in the regulation of septum location
L2_013_371G1_scaffold_56_25
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22955..24052)
DNA (1098bp) protein (366aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|SAAS:SAAS00083544}; EC=2.7.7.27 {ECO:0000256|SAAS:SAAS00083544};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
ADP-glucose pyrophosphorylase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=4 Tax=Clostridiales RepID=E5XIQ4_9FIRM
L2_013_371G1_scaffold_56_26
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24070..25344)
DNA (1275bp) protein (425aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=5 Tax=Clostridiales RepID=A5KLZ4_9FIRM
L2_013_371G1_scaffold_56_27
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25665..27050
DNA (1386bp) protein (462aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=5 Tax=Clostridiales RepID=E5XIQ2_9FIRM
L2_013_371G1_scaffold_56_28
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27418..28608
DNA (1191bp) protein (397aa)
DnaD domain protein n=5 Tax=Clostridiales RepID=A5KLZ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25388.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
DnaD and phage-associated domain
L2_013_371G1_scaffold_56_29
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28656..29654
DNA (999bp) protein (333aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QWN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18852.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
replicative DNA helicase loader DnaI
L2_013_371G1_scaffold_56_30
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29654..30838
DNA (1185bp) protein (395aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=5 Tax=root RepID=A5KLZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25386.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Displaying items 1-30 of 77 in total

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