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L2_013_371G1_scaffold_136

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_371G1_scaffold_136_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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41..820
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS13_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09665.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_013_371G1_scaffold_136_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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898..1518
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS12_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09664.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_013_371G1_scaffold_136_3
unknown

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1565..1702
DNA (138bp) protein (46aa)

This feature has no annotations

L2_013_371G1_scaffold_136_4
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1803..2297
DNA (495bp) protein (165aa)
Uncharacterized protein (Fragment) n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG93055.1}; Flags: Fragment;; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L2_013_371G1_scaffold_136_5
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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2450..3991
DNA (1542bp) protein (514aa)
Putative LPXTG-motif protein cell wall anchor domain protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EA21_9FIRM
Putative LPXTG-motif protein cell wall anchor domain protein {ECO:0000313|EMBL:CDA97398.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
roundabout, axon guidance receptor 3
L2_013_371G1_scaffold_136_6
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4122..5447
DNA (1326bp) protein (442aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Clostridium sp. CAG:91 RepID=R6VZ43_9CLOT
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDC99779.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
diguanylate cyclase (GGDEF) domain
L2_013_371G1_scaffold_136_7
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5533..6885
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W6I3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC99781.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
rarA; recombination factor protein RarA
L2_013_371G1_scaffold_136_8
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6908..7423)
DNA (516bp) protein (172aa)
Uncharacterized protein n=2 Tax=root RepID=R6X026_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC99782.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L2_013_371G1_scaffold_136_9
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7442..8416)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VME0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC99783.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
radical SAM protein, TIGR01212 family
L2_013_371G1_scaffold_136_10
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8416..9567)
DNA (1152bp) protein (384aa)
Malic enzyme (EC:1.1.1.38)
NADP-dependent malic enzyme n=1 Tax=Clostridium sp. CAG:91 RepID=R6VZ48_9CLOT
NADP-dependent malic enzyme {ECO:0000313|EMBL:CDC99784.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
L2_013_371G1_scaffold_136_11
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9874..11448
DNA (1575bp) protein (525aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Transcription termination factor Rho n=1 Tax=Clostridium sp. CAG:91 RepID=R6VRY9_9CLOT
transcription termination factor Rho
L2_013_371G1_scaffold_136_12
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

11922..12917
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6F5W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97382.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
hypothetical protein
L2_013_371G1_scaffold_136_13
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

12919..13797
DNA (879bp) protein (293aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
hemK; methyltransferase HemK (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EL02_9FIRM
L2_013_371G1_scaffold_136_14
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

13949..15025
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EBW8_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
peptide chain release factor 1
L2_013_371G1_scaffold_136_15
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15368..15616
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:303 RepID=R7IPI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE53490.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
L2_013_371G1_scaffold_136_16
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

15684..16835
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EBW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97375.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
Lysophospholipase L1 and related esterases
L2_013_371G1_scaffold_136_17
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16860..17510
DNA (651bp) protein (217aa)
Transcriptional regulator CarD family n=1 Tax=Clostridium sp. CAG:91 RepID=R6WD62_9CLOT
Transcriptional regulator CarD family {ECO:0000313|EMBL:CDD02106.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Transcriptional regulators, similar to M. xanthus CarD
L2_013_371G1_scaffold_136_18
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17897..19660
DNA (1764bp) protein (588aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
Threonine--tRNA ligase n=2 Tax=root RepID=R5ZR23_9FIRM
threonyl-tRNA synthetase
L2_013_371G1_scaffold_136_19
unknown

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comp(20012..20473)
DNA (462bp) protein (154aa)

This feature has no annotations

L2_013_371G1_scaffold_136_20
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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20715..21209
DNA (495bp) protein (165aa)
Translation initiation factor IF-3 n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EW93_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
bacterial translation initiation factor 3 (bIF-3)
L2_013_371G1_scaffold_136_21
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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21497..21853
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6ELE8_9FIRM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
LSU ribosomal protein L20P
L2_013_371G1_scaffold_136_22
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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22054..22266
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=root RepID=R6ENC7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01425.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
hypothetical protein
L2_013_371G1_scaffold_136_23
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

22263..23051
DNA (789bp) protein (263aa)
Cof-like hydrolase n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EXB0_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:CDB01426.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
cof family hydrolase
L2_013_371G1_scaffold_136_24
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

comp(23330..23725)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6FH92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01427.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
hypothetical protein
L2_013_371G1_scaffold_136_25
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23750..23932)
DNA (183bp) protein (61aa)
Toxin-antitoxin system, toxin component, HicA family n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LG41_9FIRM
Toxin-antitoxin system, toxin component, HicA family {ECO:0000313|EMBL:EET60405.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L2_013_371G1_scaffold_136_26
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24354..24830
DNA (477bp) protein (159aa)
Bacterial regulatory protein MarR family n=1 Tax=Roseburia sp. CAG:303 RepID=R7IQX4_9FIRM
Bacterial regulatory protein MarR family {ECO:0000313|EMBL:CDE53916.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
hypothetical protein
L2_013_371G1_scaffold_136_27
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

24941..26272
DNA (1332bp) protein (444aa)
MATE efflux family protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EPP6_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDA99149.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
multi antimicrobial extrusion protein MatE
L2_013_371G1_scaffold_136_28
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

26400..27854
DNA (1455bp) protein (485aa)
pepD; aminoacyl-histidine dipeptidase (EC:3.4.13.3)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EH15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA99180.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
L2_013_371G1_scaffold_136_29
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

27955..29037
DNA (1083bp) protein (361aa)
L-threonine aldolase (EC:4.1.2.5)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6FAT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA99187.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
L2_013_371G1_scaffold_136_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29227..29406
DNA (180bp) protein (60aa)
Helix-turn-helix family protein n=3 Tax=Clostridium difficile RepID=T3PK58_CLODI
Putative helix-turn-helix protein {ECO:0000313|EMBL:CCL32090.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
HipB; putative transcriptional regulator
Displaying items 1-30 of 54 in total

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