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L2_013_371G1_scaffold_366

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_371G1_scaffold_366_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(419..772)
DNA (354bp) protein (118aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=U2B8X2_CLOSY
MazG nucleotide pyrophosphohydrolase domain-containing protein {ECO:0000313|EMBL:EGA93723.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
nucleotide pyrophosphohydrolase
L2_013_371G1_scaffold_366_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2392..4038)
DNA (1647bp) protein (549aa)
GIY-YIG catalytic domain protein n=4 Tax=Clostridium RepID=E9SS45_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93724.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L2_013_371G1_scaffold_366_3
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4244..4579)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D5V8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI74931.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Virulence protein
L2_013_371G1_scaffold_366_4
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5012..6490)
DNA (1479bp) protein (493aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FD07_9CLOT
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EHF05707.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L2_013_371G1_scaffold_366_5
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6584..7180)
DNA (597bp) protein (199aa)
TIGR01440 family protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS51_CLOSY
UPF0340 protein HMPREF1020_02354 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
conserved hypothetical protein TIGR01440
L2_013_371G1_scaffold_366_6
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7719..8825)
DNA (1107bp) protein (369aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BSV1_CLOSY
L2_013_371G1_scaffold_366_7
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8983..10089)
DNA (1107bp) protein (369aa)
3-carboxymuconate cyclase (EC:3.1.1.31)
Uncharacterized protein n=3 Tax=Clostridium RepID=U2D5T8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI74906.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L2_013_371G1_scaffold_366_8
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11118..11651
DNA (534bp) protein (178aa)
DNA-binding helix-turn-helix protein n=3 Tax=Clostridium RepID=U2B9Z7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05711.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
XRE family transcriptional regulator
L2_013_371G1_scaffold_366_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11676..12752
DNA (1077bp) protein (359aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Spermidine/putrescine import ATP-binding protein PotA n=3 Tax=Clostridium RepID=G5FD12_9CLOT
L2_013_371G1_scaffold_366_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12745..13566
DNA (822bp) protein (274aa)
ABC transporter, permease protein n=4 Tax=Clostridium RepID=E9SS56_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93732.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
ABC-type spermidine/putrescine transport system, permease component I
L2_013_371G1_scaffold_366_11
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13566..15503
DNA (1938bp) protein (646aa)
Spermidine/putrescine-binding periplasmic protein PotD n=3 Tax=Clostridium RepID=E7GNF3_CLOSY
ABC transporter, solute-binding protein {ECO:0000313|EMBL:ERI74961.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Spermidine/putrescine-binding periplasmic protein
L2_013_371G1_scaffold_366_12
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15651..16328)
DNA (678bp) protein (226aa)
YheO domain-containing protein n=3 Tax=Clostridium symbiosum RepID=E7GNF4_CLOSY
YheO-like protein {ECO:0000313|EMBL:ERI74960.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L2_013_371G1_scaffold_366_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16723..18144
DNA (1422bp) protein (474aa)
Na+/H+ antiporter NhaC n=4 Tax=Clostridium RepID=E7GNF5_CLOSY
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EGA93735.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Na+/H+ antiporter NhaC
L2_013_371G1_scaffold_366_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18189..19178
DNA (990bp) protein (330aa)
1-aminocyclopropane-1-carboxylate deaminase (EC:3.5.99.7)
Putative D-cysteine desulfhydrase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS60_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93736.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L2_013_371G1_scaffold_366_15
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19493..19909
DNA (417bp) protein (139aa)
Dinitrogenase iron-molybdenum cofactor n=2 Tax=Clostridium RepID=E9SS61_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05718.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
peptidylprolyl isomerase
L2_013_371G1_scaffold_366_16
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20016..20477)
DNA (462bp) protein (154aa)
Ethanolamine utilization protein, EutP n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FD21_9CLOT
Ethanolamine utilization protein, EutP {ECO:0000313|EMBL:EHF05637.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
eutP; ethanolamine utilization protein eutP
L2_013_371G1_scaffold_366_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20481..20843)
DNA (363bp) protein (121aa)
Ethanolamine utilization protein n=3 Tax=Clostridium RepID=E7GNF9_CLOSY
Ethanolamine utilization protein {ECO:0000313|EMBL:EGA93739.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
pduU_1; propanediol utilization protein PduU
L2_013_371G1_scaffold_366_18
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20857..21402)
DNA (546bp) protein (182aa)
Carbon dioxide concentrating mechanism/carboxysome shell protein n=4 Tax=Clostridium RepID=E7GNG0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05639.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L2_013_371G1_scaffold_366_19
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21650..23008)
DNA (1359bp) protein (453aa)
Respiratory-chain NADH dehydrogenase subunit n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D5X5_CLOSY
Respiratory-chain NADH dehydrogenase subunit {ECO:0000313|EMBL:ERI74951.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
L2_013_371G1_scaffold_366_20
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23010..23288)
DNA (279bp) protein (93aa)
Carbon dioxide concentrating mechanism/carboxysome shell protein n=3 Tax=Clostridium symbiosum RepID=E7GNG2_CLOSY
Carbon dioxide concentrating mechanism/carboxysome shell protein {ECO:0000313|EMBL:EGA93742.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L2_013_371G1_scaffold_366_21
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23285..24223)
DNA (939bp) protein (313aa)
Propanediol utilization protein PduL n=2 Tax=Clostridium RepID=E9SS67_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05642.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Propanediol utilization protein
L2_013_371G1_scaffold_366_22
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24288..25016)
DNA (729bp) protein (243aa)
Putative ATP:cob(I)alamin adenosyltransferase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS68_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05643.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Propanediol utilization protein
L2_013_371G1_scaffold_366_23
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25029..25316)
DNA (288bp) protein (96aa)
BMC domain protein n=4 Tax=Clostridium RepID=E9SS69_CLOSY
Major carboxysome shell protein 1A {ECO:0000313|EMBL:ERI74947.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
microcompartments protein
L2_013_371G1_scaffold_366_24
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25403..25690)
DNA (288bp) protein (96aa)
Major carboxysome shell protein 1A n=4 Tax=Clostridium RepID=U2D5X0_CLOSY
Major carboxysome shell protein 1A {ECO:0000313|EMBL:ERI74946.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
ribonuclease 3
L2_013_371G1_scaffold_366_25
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25910..27445)
DNA (1536bp) protein (512aa)
Acetaldehyde dehydrogenase n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2B9Y1_CLOSY
Acetaldehyde dehydrogenase {ECO:0000313|EMBL:ERI74944.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
aldehyde-alcohol dehydrogenase
L2_013_371G1_scaffold_366_26
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27435..28088)
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FD31_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05647.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Ethanolamine utilization protein
L2_013_371G1_scaffold_366_27
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28145..29194)
DNA (1050bp) protein (350aa)
Ethanolamine ammonia-lyase light chain {ECO:0000256|HAMAP-Rule:MF_00601}; EC=4.3.1.7 {ECO:0000256|HAMAP-Rule:MF_00601};; Ethanolamine ammonia-lyase small subunit {ECO:0000256|HAMAP-Rule:MF_00601}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Ethanolamine ammonia-lyase light chain (EC:4.3.1.7)
Ethanolamine ammonia-lyase, light subunit n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS73_CLOSY
L2_013_371G1_scaffold_366_28
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29199..30572)
DNA (1374bp) protein (458aa)
Ethanolamine ammonia-lyase, large subunit n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FD33_9CLOT
Ethanolamine ammonia-lyase, large subunit {ECO:0000313|EMBL:EHF05649.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
ethanolamine ammonia-lyase heavy chain EutB
L2_013_371G1_scaffold_366_29
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30641..32080)
DNA (1440bp) protein (480aa)
Ethanolamine utilization protein EutA n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GNH1_CLOSY
Ethanolamine utilization protein EutA {ECO:0000313|EMBL:EGA93751.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition
Displaying 29 items

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