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L2_013_371G1_scaffold_438

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_013_371G1_scaffold_438_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..452)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SM55_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91643.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L2_013_371G1_scaffold_438_2
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

639..1145
DNA (507bp) protein (169aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=E9SM56_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03493.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L2_013_371G1_scaffold_438_3
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1248..2039)
DNA (792bp) protein (264aa)
Methyltransferase domain protein n=3 Tax=Clostridium RepID=E9SM57_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03494.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Dimethyladenosine transferase (rRNA methylation)
L2_013_371G1_scaffold_438_4
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2073..2666)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SM58_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91640.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L2_013_371G1_scaffold_438_5
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2881..3306)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FJB1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF03496.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
BadM/Rrf2 family transcriptional regulator
L2_013_371G1_scaffold_438_6
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3325..4728)
DNA (1404bp) protein (468aa)
Antioxidant, AhpC/TSA family n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2B6N9_CLOSY
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:ERI73809.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
cytochrome c biogenesis protein transmembrane region
L2_013_371G1_scaffold_438_7
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4782..6170)
DNA (1389bp) protein (463aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GUB6_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91637.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Lpd; dihydrolipoamide dehydrogenase
L2_013_371G1_scaffold_438_8
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6618..8600)
DNA (1983bp) protein (661aa)
Probable D-serine dehydratase {ECO:0000256|HAMAP-Rule:MF_01030}; EC=4.3.1.18 {ECO:0000256|HAMAP-Rule:MF_01030};; D-serine deaminase {ECO:0000256|HAMAP-Rule:MF_01030}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Probable D-serine dehydratase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SM62_CLOSY
D-serine ammonia-lyase
L2_013_371G1_scaffold_438_9
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8651..9538)
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FJB5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF03500.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits
L2_013_371G1_scaffold_438_10
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9670..11835)
DNA (2166bp) protein (722aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FJB6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF03501.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L2_013_371G1_scaffold_438_11
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11904..12440)
DNA (537bp) protein (179aa)
ParB-like protein n=4 Tax=Clostridium RepID=E9SM65_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03502.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
ParB domain-containing protein nuclease
L2_013_371G1_scaffold_438_12
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12415..13761)
DNA (1347bp) protein (449aa)
Phosphoadenosine phosphosulfate reductase family protein n=4 Tax=Clostridium RepID=U2BPU0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03503.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
phosphoadenosine phosphosulfate reductase
L2_013_371G1_scaffold_438_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14319..15593)
DNA (1275bp) protein (425aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GUB0_CLOSY
L2_013_371G1_scaffold_438_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15755..16345)
DNA (591bp) protein (197aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=4 Tax=Clostridium RepID=E9SM69_CLOSY
L2_013_371G1_scaffold_438_15
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16339..17370)
DNA (1032bp) protein (344aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=3 Tax=Clostridium RepID=E7GUA8_CLOSY
L2_013_371G1_scaffold_438_16
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17453..17971)
DNA (519bp) protein (173aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=3 Tax=Clostridium RepID=E7GUA7_CLOSY
L2_013_371G1_scaffold_438_17
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18349..18762)
DNA (414bp) protein (138aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=E9SM72_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03509.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L2_013_371G1_scaffold_438_18
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19075..20169)
DNA (1095bp) protein (365aa)
Response regulator receiver domain protein n=2 Tax=Clostridium symbiosum RepID=E9SM73_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91907.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
response regulator receiver:Metal-dependent phosphohydrolase
L2_013_371G1_scaffold_438_19
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20210..20560)
DNA (351bp) protein (117aa)
Hpt domain protein n=4 Tax=Clostridium RepID=E9SM74_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91908.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L2_013_371G1_scaffold_438_20
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20675..21607
DNA (933bp) protein (311aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase n=3 Tax=Clostridium RepID=G5FJC7_9CLOT
L2_013_371G1_scaffold_438_21
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21583..22968)
DNA (1386bp) protein (462aa)
NOL1/NOP2/sun family protein n=4 Tax=Clostridium RepID=E7GTH6_CLOSY
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EGA91910.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
tRNA and rRNA cytosine-C5-methylases
L2_013_371G1_scaffold_438_22
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23297..23875
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GTH7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91911.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L2_013_371G1_scaffold_438_23
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23996..25387)
DNA (1392bp) protein (464aa)
Short-chain fatty acids transporter n=2 Tax=Clostridium RepID=E7GTH8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03515.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Predicted membrane protein
L2_013_371G1_scaffold_438_24
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25524..26663)
DNA (1140bp) protein (380aa)
Amidohydrolase n=2 Tax=Clostridium symbiosum RepID=E7GTH9_CLOSY
Amidohydrolase {ECO:0000313|EMBL:EGA91913.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Imidazolonepropionase and related amidohydrolases
L2_013_371G1_scaffold_438_25
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26797..28209)
DNA (1413bp) protein (471aa)
C4-dicarboxylate anaerobic carrier n=4 Tax=Clostridium RepID=E7GTI0_CLOSY
C4-dicarboxylate anaerobic carrier {ECO:0000313|EMBL:EGA91914.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Predicted membrane protein
L2_013_371G1_scaffold_438_26
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28491..28997)
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FIF6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF03804.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L2_013_371G1_scaffold_438_27
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29109..29864
DNA (756bp) protein (252aa)
MerR family Transcriptional regulator n=3 Tax=Clostridium RepID=E7GTI1_CLOSY
MerR family Transcriptional regulator {ECO:0000313|EMBL:EGA91915.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Predicted transcriptional regulators
L2_013_371G1_scaffold_438_28
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30017..30499)
DNA (483bp) protein (161aa)
50S ribosomal protein L21 domain protein n=4 Tax=Clostridium RepID=E9SM82_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91916.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L2_013_371G1_scaffold_438_29
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30696..32021)
DNA (1326bp) protein (442aa)
Transporter n=2 Tax=Clostridium RepID=E9SM83_CLOSY
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Na+-dependent transporters of the SNF family
L2_013_371G1_scaffold_438_30
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32064..33347)
DNA (1284bp) protein (428aa)
Na+/H+ antiporter family protein n=3 Tax=Clostridium RepID=U2DDE8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03521.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
putative methionine transporter, NhaC family (TC 2.A.35.1.-)
Displaying 30 items

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