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L2_019_000G1_scaffold_384

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_384_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..506)
DNA (504bp) protein (168aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Clostridium difficile RepID=T4B587_CLODI
gcp; DNA-binding/iron metalloprotein/AP endonuclease
L2_019_000G1_scaffold_384_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(512..988)
DNA (477bp) protein (159aa)
rimI; putative alanine acetyltransferase, ribosomalfamily (EC:2.3.1.128)
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EQG78672.1}; EC=2.3.1.128 {ECO:0000313|EMBL:EQG78672.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Ribosomal-protein-alanine acetyltransferase n=172 Tax=Clostridium difficile RepID=T3IQ00_CLODC
L2_019_000G1_scaffold_384_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(978..1694)
DNA (717bp) protein (239aa)
Universal bacterial protein YeaZ n=93 Tax=Clostridium difficile RepID=G6BQV0_CLODI
glycoprotease
Putative peptidase, M22 family {ECO:0000313|EMBL:CCL21139.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_019_000G1_scaffold_384_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1694..2146)
DNA (453bp) protein (151aa)
tRNA threonylcarbamoyl adenosine modification protein YjeE n=33 Tax=Clostridium difficile RepID=T2VIY5_CLODI
ATP/GTP hydrolase
Putative P-loop ATPases {ECO:0000313|EMBL:CCL21138.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_019_000G1_scaffold_384_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2285..3325)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=31 Tax=Clostridium difficile RepID=T2VIX2_CLODI
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21137.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_019_000G1_scaffold_384_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3654..4259)
DNA (606bp) protein (202aa)
Uncharacterized protein n=32 Tax=Clostridium difficile RepID=T2VK18_CLODI
riboflavin transporter
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_019_000G1_scaffold_384_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4560..5726)
DNA (1167bp) protein (389aa)
Amidohydrolase family protein n=128 Tax=Clostridium difficile RepID=G6B2Y7_CLODI
amidohydrolase
Amidohydrolase family protein {ECO:0000313|EMBL:EHJ29877.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_019_000G1_scaffold_384_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5874..8015)
DNA (2142bp) protein (714aa)
S1 RNA binding domain protein n=32 Tax=Clostridium difficile RepID=T2VJS9_CLODI
Tex-like protein {ECO:0000313|EMBL:EHJ34744.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative S1 RNA-binding domain-containingprotein
L2_019_000G1_scaffold_384_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8159..9175)
DNA (1017bp) protein (339aa)
Peptide chain release factor 2 n=42 Tax=Clostridium difficile RepID=G6B2Y9_CLODI
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
prfB; peptide chain release factor 2
L2_019_000G1_scaffold_384_10
unknown

Not on your lists

comp(9156..9266)
DNA (111bp) protein (37aa)

This feature has no annotations

L2_019_000G1_scaffold_384_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9244..9336)
DNA (93bp) protein (31aa)
Uncharacterized protein n=25 Tax=Clostridium difficile RepID=U3WU37_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL21164.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_019_000G1_scaffold_384_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9281..11956)
DNA (2676bp) protein (892aa)
Protein translocase subunit SecA 1 n=198 Tax=Clostridium difficile RepID=SECA1_CLOD6
secA1; Protein translocase subunit SecA1
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_384_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12088..12639)
DNA (552bp) protein (184aa)
Ribosomal subunit interface protein n=24 Tax=Clostridium difficile RepID=T2TRA5_CLODI
putative RNA-binding protein
Ribosomal subunit interface protein {ECO:0000313|EMBL:EQG78582.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_019_000G1_scaffold_384_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12867..13034)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=G6BQU1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS83121.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_019_000G1_scaffold_384_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13192..13866)
DNA (675bp) protein (225aa)
N-(5'phosphoribosyl)anthranilate (PRA) isomerase family protein n=68 Tax=Clostridium difficile RepID=T2VIE9_CLODI
Copper homeostasis protein {ECO:0000313|EMBL:CDS82981.1}; Putative copper homeostasis protein {ECO:0000313|EMBL:CDS83119.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
copper homeostasis protein
L2_019_000G1_scaffold_384_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13869..14921)
DNA (1053bp) protein (351aa)
Dipeptidase family protein n=118 Tax=Clostridium difficile RepID=T2V263_CLODI
Putative peptidase {ECO:0000313|EMBL:CCL21160.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative peptidase
L2_019_000G1_scaffold_384_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14970..15929)
DNA (960bp) protein (320aa)
N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase (EC:3.5.1.26)
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase {ECO:0000313|EMBL:CCL29072.1}; EC=3.5.1.26 {ECO:0000313|EMBL:CCL29072.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase n=125 Tax=Clostridium difficile RepID=T3ILR0_CLODC
L2_019_000G1_scaffold_384_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16025..16546)
DNA (522bp) protein (174aa)
Uncharacterized protein n=33 Tax=Clostridium difficile RepID=U3YZP5_CLODI
SelenoB, glycine/betaine/sarcosine/D-proline reductase family protein {ECO:0000313|EMBL:EQE70599.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L2_019_000G1_scaffold_384_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16554..17888)
DNA (1335bp) protein (445aa)
PTS system, cellobiose-specific IIC component n=34 Tax=Clostridium difficile RepID=T2XDR7_CLODI
PTS system transporter subunit IIC
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_384_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17927..18253)
DNA (327bp) protein (109aa)
PTS system, IIb component n=212 Tax=Clostridium difficile RepID=C9XIQ8_CLODC
PTS system transporter subunit IIB
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EHJ34754.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_019_000G1_scaffold_384_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18277..18585)
DNA (309bp) protein (103aa)
PTS system, IIa component n=218 Tax=Clostridium difficile RepID=C9XIQ7_CLODC
PTS system transporter subunit IIA
PTS system, lactose/cellobiose-family IIA component {ECO:0000313|EMBL:CCL29068.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_384_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18726..20630)
DNA (1905bp) protein (635aa)
PRD domain protein n=29 Tax=Clostridium difficile RepID=T2VLQ4_CLODI
PRD domain protein {ECO:0000313|EMBL:EHJ34756.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
transcription antiterminator
L2_019_000G1_scaffold_384_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20971..21597)
DNA (627bp) protein (209aa)
Phosphoribosyl transferase domain protein n=43 Tax=Clostridium difficile RepID=T2WG49_CLODI
phosphoribosyl transferase
Putative phosphoribosyl transferase {ECO:0000313|EMBL:CCL29066.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_384_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21756..23975)
DNA (2220bp) protein (740aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Viral (Super1) RNA helicase family protein n=32 Tax=Clostridium difficile RepID=T2VJZ4_CLODI
DNA-binding protein
L2_019_000G1_scaffold_384_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24239..25336)
DNA (1098bp) protein (366aa)
Putative membrane protein n=30 Tax=Clostridium difficile RepID=T2VLM9_CLODI
putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ34759.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_019_000G1_scaffold_384_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25651..26844)
DNA (1194bp) protein (398aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
S-adenosylmethionine synthase n=37 Tax=Clostridium difficile RepID=G6B304_CLODI
metE; S-adenosylmethionine synthetase
L2_019_000G1_scaffold_384_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27272..27781
DNA (510bp) protein (170aa)
Uncharacterized protein n=191 Tax=Clostridium difficile RepID=U3UEJ2_CLODI
hypothetical protein
Putative sporulation protein YyaC {ECO:0000313|EMBL:EQG78573.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_019_000G1_scaffold_384_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27892..28320)
DNA (429bp) protein (143aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein]dehy dratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=40 Tax=Clostridium difficile RepID=G6B306_CLODI
L2_019_000G1_scaffold_384_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28336..29355)
DNA (1020bp) protein (340aa)
Rod shape-determining protein MreB n=36 Tax=Clostridium difficile RepID=G6B307_CLODI
Rod shape-determining protein MreB {ECO:0000313|EMBL:EHJ34763.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
mreB1; rod shape-determining protein Mbl
L2_019_000G1_scaffold_384_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29552..29812)
DNA (261bp) protein (87aa)
Stage III sporulation protein D n=85 Tax=Clostridium difficile RepID=C9XIP8_CLODC
spoIIID; stage III sporulation protein D
Stage III sporulation protein D {ECO:0000313|EMBL:CCK94450.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Displaying items 1-30 of 46 in total

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