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L2_019_000G1_scaffold_403

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_403_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(530..1210)
DNA (681bp) protein (227aa)
Transcriptional regulatory family protein n=55 Tax=Clostridium difficile RepID=T2TRM0_CLODI
Transcriptional regulatory family protein {ECO:0000313|EMBL:EQG76458.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Two-component response regulator
L2_019_000G1_scaffold_403_2
unknown

Not on your lists

comp(1369..1512)
DNA (144bp) protein (48aa)
Uncharacterized protein n=54 Tax=Clostridium difficile RepID=T2UJT8_CLODI
L2_019_000G1_scaffold_403_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2481..3353)
DNA (873bp) protein (291aa)
Helix-turn-helix domain, rpiR family protein n=217 Tax=Clostridium difficile RepID=C9XJR3_CLODC
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CCL30257.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_403_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3747..4325)
DNA (579bp) protein (193aa)
Uncharacterized protein n=204 Tax=Clostridium difficile RepID=C9XJR4_CLODC
hypothetical protein
Putative rRNA methylase {ECO:0000313|EMBL:CCK98405.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L2_019_000G1_scaffold_403_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4383..5099)
DNA (717bp) protein (239aa)
rluB; Ribosomal large subunit pseudouridine synthaseB (EC:4.2.1.70)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Pseudouridine synthase n=63 Tax=Clostridium difficile RepID=T2V5Y1_CLODI
L2_019_000G1_scaffold_403_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5290..6375
DNA (1086bp) protein (362aa)
Uncharacterized protein n=39 Tax=Clostridium difficile RepID=T4TP02_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQH99687.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
putative membrane protein
L2_019_000G1_scaffold_403_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6530..7189)
DNA (660bp) protein (220aa)
Putative lipoprotein n=48 Tax=Clostridium difficile RepID=T3B051_CLODI
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:EQE63259.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_403_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7406..8698)
DNA (1293bp) protein (431aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Diaminopimelate decarboxylase n=57 Tax=Clostridium difficile RepID=G6BRL3_CLODI
lysA; diaminopimelate decarboxylase
L2_019_000G1_scaffold_403_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8716..9909)
DNA (1194bp) protein (398aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Aspartokinase n=176 Tax=Clostridium difficile RepID=C9XJR9_CLODC
aspartokinase II
L2_019_000G1_scaffold_403_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10270..10887)
DNA (618bp) protein (206aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=Q188C3_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30265.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_403_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11057..12757)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=174 Tax=Clostridium difficile RepID=Q188C6_CLOD6
Cell shape-determining protein {ECO:0000313|EMBL:CKH20299.1}; Putative membrane protein {ECO:0000313|EMBL:CEJ98651.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L2_019_000G1_scaffold_403_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13154..13720)
DNA (567bp) protein (189aa)
Uncharacterized protein n=211 Tax=Clostridium difficile RepID=C9XJS2_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ98652.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_019_000G1_scaffold_403_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13876..14589)
DNA (714bp) protein (238aa)
Uncharacterized protein n=53 Tax=Clostridium difficile RepID=G6BRK8_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE63226.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_403_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14881..16545
DNA (1665bp) protein (555aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
glnS; Glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=179 Tax=Clostridium difficile RepID=SYQ_CLOD6
L2_019_000G1_scaffold_403_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16652..17551)
DNA (900bp) protein (300aa)
Lipid kinase, YegS/Rv2252/BmrU family protein n=204 Tax=Clostridium difficile RepID=C9XJS5_CLODC
lipid kinase
Putative lipid kinase {ECO:0000313|EMBL:CCL30271.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_403_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17578..18216)
DNA (639bp) protein (213aa)
Uncharacterized protein n=169 Tax=Clostridium difficile RepID=T3GK75_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE63224.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_403_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18553..19551)
DNA (999bp) protein (333aa)
Uncharacterized protein n=26 Tax=Clostridium difficile RepID=T2V5U3_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30273.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_403_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19649..20224)
DNA (576bp) protein (192aa)
Uncharacterized protein n=210 Tax=Clostridium difficile RepID=Q188D2_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK98420.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L2_019_000G1_scaffold_403_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20540..20803
DNA (264bp) protein (88aa)
Uncharacterized protein n=24 Tax=Clostridium difficile RepID=T3JGG0_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL22341.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_019_000G1_scaffold_403_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21240..21617)
DNA (378bp) protein (126aa)
Penicillinase repressor family protein n=213 Tax=Clostridium difficile RepID=C9XJT0_CLODC
regulatory protein
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EHJ29773.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_019_000G1_scaffold_403_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21928..23070
DNA (1143bp) protein (381aa)
Integrase n=176 Tax=Clostridium difficile RepID=C9XJT1_CLODC
integrase
Integrase {ECO:0000313|EMBL:CBE04934.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_019_000G1_scaffold_403_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23278..23754)
DNA (477bp) protein (159aa)
Uncharacterized protein n=26 Tax=Clostridium difficile RepID=T2V7K0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE63222.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L2_019_000G1_scaffold_403_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23953..25578)
DNA (1626bp) protein (542aa)
ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CCL22344.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL22344.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC transporter family protein n=157 Tax=Clostridium difficile RepID=C9XJT3_CLODC
ABC transporter ATP-binding protein
L2_019_000G1_scaffold_403_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25916..26935)
DNA (1020bp) protein (340aa)
Molybdopterin binding domain protein n=189 Tax=Clostridium difficile RepID=G6BRJ7_CLODI
molybdopterin biosynthesis protein
Putative molybdopterin binding domain protein {ECO:0000313|EMBL:EQH99705.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_019_000G1_scaffold_403_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26932..27501)
DNA (570bp) protein (190aa)
Molybdenum hydroxylase accessory protein, YgfJ family n=167 Tax=Clostridium difficile RepID=G6BRJ6_CLODI
molybdopterin-guanine dinucleotide biosynthesis protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30282.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_403_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27608..28330)
DNA (723bp) protein (241aa)
Uncharacterized protein n=23 Tax=Clostridium difficile RepID=U3YQA8_CLODI
hypothetical protein
Putative selenium-dependent hydroxylase accessory protein YqeC {ECO:0000313|EMBL:EQE63220.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_403_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28513..29826)
DNA (1314bp) protein (438aa)
Transposase, IS605 OrfB family n=142 Tax=Clostridium difficile RepID=G6BRJ4_CLODI
transposase
Putative transposase {ECO:0000313|EMBL:CBE04944.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_019_000G1_scaffold_403_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29929..32235)
DNA (2307bp) protein (769aa)
Xanthine dehydrogenase, molybdenum binding subunit {ECO:0000313|EMBL:CCL22350.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CCL22350.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
xdhA; Xanthine dehydrogenase, molybdenum bindingsubunit (EC:1.17.1.4)
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein n=93 Tax=Clostridium difficile RepID=G6BRJ3_CLODI
L2_019_000G1_scaffold_403_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32228..33022)
DNA (795bp) protein (265aa)
FAD binding domain in molybdopterin dehydrogenase n=88 Tax=Clostridium difficile RepID=G6BRJ2_CLODI
xanthine dehydrogenase FAD-binding subunit
FAD binding domain in molybdopterin dehydrogenase family protein {ECO:0000313|EMBL:EQH99710.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_019_000G1_scaffold_403_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33129..34487)
DNA (1359bp) protein (453aa)
Permease family protein n=154 Tax=Clostridium difficile RepID=T3GP44_CLODC
pbuX; putative xanthine permease
Putative xanthine permease {ECO:0000313|EMBL:CCL22352.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Displaying items 1-30 of 39 in total

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