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L2_019_000G1_scaffold_425

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_425_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..208
DNA (207bp) protein (69aa)
Probable transcriptional regulatory protein CPR_1922 n=10 Tax=Clostridium perfringens RepID=Y1922_CLOPS
hypothetical protein
Probable transcriptional regulatory protein AC3_2488 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_425_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

634..1068
DNA (435bp) protein (145aa)
Hemoglobin n=8 Tax=Clostridium perfringens RepID=H7CXY0_CLOPF
hemoglobin
Bacterial hemoglobin {ECO:0000313|EMBL:BAB81659.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_425_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1544..2542
DNA (999bp) protein (333aa)
Protein-tyrosine phosphatase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XJ09_CLOPE
ptp; hypothetical protein
Protein-tyrosine phosphatase {ECO:0000313|EMBL:BAB81658.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_425_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2791..6438
DNA (3648bp) protein (1216aa)
cpdB, yfkN; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein (EC:3.1.3.6 3.1.4.16)
Ser/Thr protein phosphatase family protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BPX5_CLOPF
Ser/Thr protein phosphatase family protein {ECO:0000313|EMBL:EDT16315.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_425_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6686..10231
DNA (3546bp) protein (1182aa)
cpdB, yfkN; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein (EC:3.1.3.6 3.1.4.16)
Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase protein n=1 Tax=Clostridium perfringens F262 RepID=H7CXX7_CLOPF
Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase protein {ECO:0000313|EMBL:EIA16491.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_019_000G1_scaffold_425_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10379..10972
DNA (594bp) protein (198aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=H7CXX6_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA16490.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_019_000G1_scaffold_425_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11200..11805
DNA (606bp) protein (202aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Holliday junction ATP-dependent DNA helicase RuvA n=5 Tax=Clostridium perfringens RepID=RUVA_CLOPE
ruvA; Holliday junction DNA helicase RuvA
L2_019_000G1_scaffold_425_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11819..12859
DNA (1041bp) protein (347aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Holliday junction ATP-dependent DNA helicase RuvB n=9 Tax=Clostridium perfringens RepID=RUVB_CLOP1
L2_019_000G1_scaffold_425_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12881..13906
DNA (1026bp) protein (342aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=8 Tax=Clostridium perfringens RepID=QUEA_CLOP1
L2_019_000G1_scaffold_425_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13930..15072
DNA (1143bp) protein (381aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Queuine tRNA-ribosyltransferase n=6 Tax=Clostridium perfringens RepID=TGT_CLOP1
L2_019_000G1_scaffold_425_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15111..15380
DNA (270bp) protein (90aa)
Preprotein translocase subunit YajC n=9 Tax=Clostridium perfringens RepID=H7CXX1_CLOPF
yajC; preprotein translocase subunit YajC
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EDT16288.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_425_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15576..15716
DNA (141bp) protein (47aa)
Uncharacterized protein n=10 Tax=Clostridium perfringens RepID=H7CXX0_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT25408.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L2_019_000G1_scaffold_425_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15786..17159
DNA (1374bp) protein (458aa)
AstB/chuR-related protein n=1 Tax=Clostridium perfringens F262 RepID=H7CXW9_CLOPF
Radical SAM domain protein {ECO:0000313|EMBL:EDS80397.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
astB/chuR-related protein
L2_019_000G1_scaffold_425_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17257..18516
DNA (1260bp) protein (420aa)
Protein translocase subunit SecD n=5 Tax=Clostridium perfringens RepID=H7CXW8_CLOPF
secD; preprotein translocase subunit SecD
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_019_000G1_scaffold_425_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18509..19378
DNA (870bp) protein (290aa)
Protein-export membrane protein SecF n=8 Tax=Clostridium perfringens RepID=H7CXW7_CLOPF
secF; preprotein translocase subunit SecF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_425_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19579..20433
DNA (855bp) protein (285aa)
DHH domain-containing protein n=9 Tax=Clostridium perfringens RepID=H7CXW6_CLOPF
DHH domain-containing protein
DHH domain protein {ECO:0000313|EMBL:EDT16263.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_425_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20477..20995
DNA (519bp) protein (173aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00004}; Short=APRT {ECO:0000255|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00004};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
Adenine phosphoribosyltransferase n=10 Tax=Clostridium perfringens RepID=APT_CLOP1
L2_019_000G1_scaffold_425_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21147..23327
DNA (2181bp) protein (727aa)
GTP pyrophosphokinase {ECO:0000313|EMBL:EDT16339.1}; EC=2.7.6.5 {ECO:0000313|EMBL:EDT16339.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
GTP pyrophosphokinase n=3 Tax=Clostridium perfringens RepID=H7CXW4_CLOPF
relA; GTP pyrophosphokinase
L2_019_000G1_scaffold_425_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23342..23791
DNA (450bp) protein (150aa)
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000255|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000255|HAMAP-Rule:MF_00518};; D-tyrosyl-tRNA(Tyr) deacylase; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
D-tyrosyl-tRNA(Tyr) deacylase n=8 Tax=Clostridium perfringens RepID=DTD_CLOP1
L2_019_000G1_scaffold_425_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23951..24571
DNA (621bp) protein (207aa)
Metallo-beta-lactamase family protein n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V033_CLOPF
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:EDT72783.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
metallo-beta-lactamase
L2_019_000G1_scaffold_425_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24561..26003
DNA (1443bp) protein (481aa)
Probable coproporphyrinogen III oxidase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XJ26_CLOPE
hemZ; coproporphyrinogen III oxidase
Probable coproporphyrinogen III oxidase {ECO:0000313|EMBL:BAB81641.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_425_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26035..27282
DNA (1248bp) protein (416aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000255|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00127}; Short=HisRS {ECO:0000255|HAMAP-Rule:MF_00127};; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
Histidine--tRNA ligase n=2 Tax=Clostridium perfringens RepID=SYH_CLOP1
L2_019_000G1_scaffold_425_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27303..29096
DNA (1794bp) protein (598aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EDS80241.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EDS80241.1};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Aspartate--tRNA ligase n=5 Tax=Clostridium perfringens RepID=SYD_CLOP1
L2_019_000G1_scaffold_425_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29382..29654
DNA (273bp) protein (91aa)
Uncharacterized protein n=11 Tax=Clostridium perfringens RepID=H7CXV8_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT16245.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_425_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29672..30193)
DNA (522bp) protein (174aa)
Uncharacterized protein n=11 Tax=Clostridium perfringens RepID=H7CXV7_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26563.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L2_019_000G1_scaffold_425_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30194..30964)
DNA (771bp) protein (257aa)
Uncharacterized protein n=8 Tax=Clostridium perfringens RepID=H7CXV6_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT16309.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_425_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31144..32376
DNA (1233bp) protein (411aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=3 Tax=Clostridium perfringens RepID=H7CXV5_CLOPF
L2_019_000G1_scaffold_425_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32626..33588
DNA (963bp) protein (321aa)
Dipeptidase family protein n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SRQ3_CLOPS
dipeptidase family protein
Dipeptidase family protein {ECO:0000313|EMBL:ABG87196.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L2_019_000G1_scaffold_425_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33694..34440
DNA (747bp) protein (249aa)
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XJ34_CLOPE
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:BAB81633.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_425_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34759..36282)
DNA (1524bp) protein (508aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Two-component sensor histidine kinase n=3 Tax=Clostridium perfringens RepID=Q8XJ35_CLOPE
sensor histidine kinase
Displaying items 1-30 of 36 in total

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