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L2_019_000G1_scaffold_558

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_558_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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142..1620
DNA (1479bp) protein (493aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ade; Group I intron (EC:3.5.4.2)
Adenine deaminase n=3 Tax=Clostridium difficile RepID=T3W846_CLODI
L2_019_000G1_scaffold_558_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1972..2436
DNA (465bp) protein (155aa)
bcp; putative thiol peroxidase (EC:1.11.1.15)
AhpC/TSA family protein n=188 Tax=Clostridium difficile RepID=C9XT34_CLODC
AhpC/TSA family protein {ECO:0000313|EMBL:EQE64705.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_558_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2446..3189
DNA (744bp) protein (248aa)
UPF0246 protein HMPREF9945_02773 n=62 Tax=Clostridium difficile RepID=G6BXJ8_CLODI
UPF0246 protein QQG_2038 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
hypothetical protein
L2_019_000G1_scaffold_558_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3317..5974
DNA (2658bp) protein (886aa)
HAD ATPase, P-type, IC family protein {ECO:0000313|EMBL:EQI84086.1}; EC=3.6.3.- {ECO:0000313|EMBL:EQI84086.1};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
P-type calcium transport ATPase (EC:3.6.3.8)
HAD ATPase, P-type, IC family protein n=57 Tax=Clostridium difficile RepID=T3GQ65_CLODC
L2_019_000G1_scaffold_558_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6240..7505
DNA (1266bp) protein (422aa)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein n=179 Tax=Clostridium difficile RepID=C9XT60_CLODC
cysD; O-acetylhomoserine sulfhydrylase
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein {ECO:0000313|EMBL:EQE64708.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_558_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7535..8425
DNA (891bp) protein (297aa)
Homoserine O-succinyltransferase {ECO:0000313|EMBL:EQE64692.1}; EC=2.3.1.46 {ECO:0000313|EMBL:EQE64692.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Homoserine O-succinyltransferase n=201 Tax=Clostridium difficile RepID=C9XT61_CLODC
metA; homoserine O-succinyltransferase
L2_019_000G1_scaffold_558_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8916..9359
DNA (444bp) protein (148aa)
MarR family protein n=208 Tax=Clostridium difficile RepID=C9XT62_CLODC
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCL30075.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_558_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9390..11207
DNA (1818bp) protein (606aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
ATP-dependent zinc metalloprotease FtsH n=202 Tax=Clostridium difficile RepID=C9XT63_CLODC
cell division protein
L2_019_000G1_scaffold_558_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11385..14087
DNA (2703bp) protein (901aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Universal stress family protein n=104 Tax=Clostridium difficile RepID=T2TWF7_CLODI
kdpD; two-component sensor histidine kinase
L2_019_000G1_scaffold_558_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14121..14819
DNA (699bp) protein (233aa)
Response regulator n=131 Tax=Clostridium difficile RepID=C9XT65_CLODC
kdpE; two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CKH13924.1}; Two-component response regulator KdpE {ECO:0000313|EMBL:CEJ98437.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_019_000G1_scaffold_558_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15176..16132
DNA (957bp) protein (319aa)
CorA-like Mg2+ transporter family protein n=183 Tax=Clostridium difficile RepID=T2TWD5_CLODI
putative cation (Mg2+ and Co2+)transport-related, membrane protein
CorA-like Mg2+ transporter family protein {ECO:0000313|EMBL:EQE64724.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_558_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16594..17607
DNA (1014bp) protein (338aa)
aroF; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000313|EMBL:CCL22074.1}; EC=2.5.1.54 {ECO:0000313|EMBL:CCL22074.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=192 Tax=Clostridium difficile RepID=T3GQ48_CLODC
L2_019_000G1_scaffold_558_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17629..18693
DNA (1065bp) protein (355aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
3-dehydroquinate synthase n=169 Tax=Clostridium difficile RepID=C9XT69_CLODC
aroB; 3-dehydroquinate synthase
L2_019_000G1_scaffold_558_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18693..20006
DNA (1314bp) protein (438aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=71 Tax=Clostridium difficile RepID=T2TW32_CLODI
L2_019_000G1_scaffold_558_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19984..21063
DNA (1080bp) protein (360aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
aroC; Chorismate synthase(5-enolpyruvylshikimate-3-phosphate phospholyase) (EC:4.2.3.5)
Chorismate synthase n=110 Tax=Clostridium difficile RepID=U3WDT1_CLODI
L2_019_000G1_scaffold_558_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21066..22262
DNA (1197bp) protein (399aa)
pheA; Bifunctional P-protein, chorismatemutase/prephenate dehydratase (EC:4.2.1.51 5.4.99.5)
Bifunctional P-protein, chorismate mutase/prephenate dehydratase {ECO:0000313|EMBL:CAJ68707.1}; EC=4.2.1.51 {ECO:0000313|EMBL:CAJ68707.1};; EC=5.4.99.5 {ECO:0000313|EMBL:CAJ68707.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Chorismate mutase n=59 Tax=Clostridium difficile RepID=T2V989_CLODI
L2_019_000G1_scaffold_558_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22309..23118
DNA (810bp) protein (270aa)
aroE1; shikimate dehydrogenase 1 (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Shikimate dehydrogenase n=129 Tax=Clostridium difficile RepID=T3GLV1_CLODC
L2_019_000G1_scaffold_558_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23130..23663
DNA (534bp) protein (178aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Shikimate kinase n=138 Tax=Clostridium difficile RepID=C9XT74_CLODC
shikimate kinase
L2_019_000G1_scaffold_558_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23684..24523
DNA (840bp) protein (280aa)
Prephenate dehydrogenase family protein n=28 Tax=Clostridium difficile RepID=T2WFE9_CLODI
prephenate dehydrogenase
Prephenate dehydrogenase {ECO:0000313|EMBL:EHJ29576.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_019_000G1_scaffold_558_20
unknown

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24549..24659
DNA (111bp) protein (37aa)

This feature has no annotations

L2_019_000G1_scaffold_558_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24791..26272
DNA (1482bp) protein (494aa)
Diguanylate cyclase domain protein n=101 Tax=Clostridium difficile RepID=T3GPK7_CLODC
Signaling protein {ECO:0000313|EMBL:CKH14172.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Two-component response regulator
L2_019_000G1_scaffold_558_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26305..29742
DNA (3438bp) protein (1146aa)
Diguanylate cyclase domain protein n=3 Tax=Clostridium difficile RepID=T3W5M8_CLODI
Two-component sensor histidine kinase {ECO:0000313|EMBL:CCL22083.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Two-component sensor histidine kinase
L2_019_000G1_scaffold_558_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29760..30506
DNA (747bp) protein (249aa)
Uncharacterized protein n=124 Tax=Clostridium difficile RepID=Q187F2_CLOD6
conserved hypothetical protein, DUF218 family
Uncharacterized protein {ECO:0000313|EMBL:CAJ68713.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_019_000G1_scaffold_558_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30455..30763)
DNA (309bp) protein (103aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=Q187F3_CLOD6
hypothetical protein
Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein {ECO:0000313|EMBL:CKH14242.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98451.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_019_000G1_scaffold_558_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31566..35699
DNA (4134bp) protein (1378aa)
Conserved repeat domain protein n=10 Tax=Clostridium difficile RepID=T2XMP8_CLODI
conserved repeat protein
Conserved repeat protein {ECO:0000313|EMBL:CEJ98452.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_019_000G1_scaffold_558_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36156..36503
DNA (348bp) protein (116aa)
Uncharacterized protein n=156 Tax=Clostridium difficile RepID=C9XJB9_CLODC
hypothetical protein
Cupin domain protein {ECO:0000313|EMBL:EQH99528.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_019_000G1_scaffold_558_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36653..37144)
DNA (492bp) protein (164aa)
NMT1-like family protein n=16 Tax=Clostridium difficile RepID=T2WHM3_CLODI
hypothetical protein
Putative binding protein ytlA {ECO:0000313|EMBL:CCL22087.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Displaying 27 items

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