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L2_019_000G1_scaffold_574

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_574_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..81)
DNA (81bp) protein (27aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=D7WAZ2_9CORY
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L2_019_000G1_scaffold_574_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(306..953)
DNA (648bp) protein (216aa)
sigH; RNA polymerase factor sigma-70 (EC:2.7.7.6)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EIA15935.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EIA15935.1};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
RNA polymerase factor sigma-70 n=5 Tax=Clostridium perfringens RepID=H7CZC7_CLOPF
L2_019_000G1_scaffold_574_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1035..1544)
DNA (510bp) protein (170aa)
Uncharacterized protein n=10 Tax=Clostridium perfringens RepID=H7CZC8_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26021.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L2_019_000G1_scaffold_574_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1560..2429)
DNA (870bp) protein (290aa)
RNA methyltransferase, TrmH family, group 3 n=5 Tax=Clostridium perfringens RepID=Q0SQC5_CLOPS
RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EDS79826.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L2_019_000G1_scaffold_574_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2452..3189)
DNA (738bp) protein (246aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Thymidylate synthase ThyX n=8 Tax=Clostridium perfringens RepID=THYX_CLOPE
L2_019_000G1_scaffold_574_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3205..3615)
DNA (411bp) protein (137aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Mini-ribonuclease 3 n=4 Tax=Clostridium perfringens RepID=H7CZD1_CLOPF
hypothetical protein
L2_019_000G1_scaffold_574_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3842..5242)
DNA (1401bp) protein (467aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Cysteine--tRNA ligase n=4 Tax=Clostridium perfringens RepID=SYC_CLOPE
L2_019_000G1_scaffold_574_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5347..7059)
DNA (1713bp) protein (571aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=6 Tax=Clostridium perfringens RepID=SYP_CLOPE
L2_019_000G1_scaffold_574_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7413..8090)
DNA (678bp) protein (226aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BV28_CLOPF
L2_019_000G1_scaffold_574_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8104..9255)
DNA (1152bp) protein (384aa)
PIN/TRAM domain protein n=2 Tax=Clostridium perfringens RepID=B1BK22_CLOPF
PIN/TRAM domain-containing protein
PIN/TRAM domain protein {ECO:0000313|EMBL:EDT14415.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_574_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9522..9923
DNA (402bp) protein (134aa)
Uncharacterized protein n=6 Tax=Clostridium perfringens RepID=Q8XHQ1_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB82137.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_574_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9957..11021)
DNA (1065bp) protein (355aa)
DNA integrity scanning protein DisA n=9 Tax=Clostridium perfringens RepID=DISA_CLOPE
DNA integrity scanning protein DisA
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00207481}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L2_019_000G1_scaffold_574_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11041..12426)
DNA (1386bp) protein (462aa)
DNA repair protein radA n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RA06_CLOPF
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
radA; DNA repair protein RadA
L2_019_000G1_scaffold_574_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12653..13381)
DNA (729bp) protein (243aa)
nagB; glucosamine-6-phosphate deaminase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase {ECO:0000255|HAMAP-Rule:MF_01241}; EC=3.5.99.6 {ECO:0000255|HAMAP-Rule:MF_01241};; GlcN6P deaminase {ECO:0000255|HAMAP-Rule:MF_01241}; Short=GNPDA {ECO:0000255|HAMAP-Rule:MF_01241};; Glucosamine-6-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_01241}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
Glucosamine-6-phosphate deaminase n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=NAGB_CLOP1
L2_019_000G1_scaffold_574_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13372..14100)
DNA (729bp) protein (243aa)
GntR family transcriptional regulator n=4 Tax=Clostridium perfringens RepID=H7CZE0_CLOPF
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:EIA15948.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_019_000G1_scaffold_574_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14560..14787
DNA (228bp) protein (76aa)
YruB family glutaredoxin-like protein n=10 Tax=Clostridium perfringens RepID=H7CZE2_CLOPF
glutaredoxin
Glutaredoxin-like protein, YruB-family {ECO:0000313|EMBL:EDT14437.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_019_000G1_scaffold_574_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14910..16358)
DNA (1449bp) protein (483aa)
NADP-dependent glyceraldehyde-3-phosphate dehydrogenas n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XHP4_CLOPE
gapN; NADP-dependent glyceraldehyde-3-phosphate dehydrogenas
NADP-dependent glyceraldehyde-3-phosphate dehydrogenas {ECO:0000313|EMBL:BAB82144.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_574_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16375..16608)
DNA (234bp) protein (78aa)
YruB family glutaredoxin-like protein n=11 Tax=Clostridium perfringens RepID=H7CZE4_CLOPF
YruB family glutaredoxin-like protein
Glutaredoxin-like protein, YruB-family {ECO:0000313|EMBL:EDT26005.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L2_019_000G1_scaffold_574_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16611..17549)
DNA (939bp) protein (313aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Thioredoxin reductase n=10 Tax=Clostridium perfringens RepID=H7CZE5_CLOPF
thioredoxin-disulfide reductase
L2_019_000G1_scaffold_574_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17821..20271)
DNA (2451bp) protein (817aa)
Negative regulator of genetic competence MecB/ClpC {ECO:0000313|EMBL:EDT14449.1}; EC=3.4.21.- {ECO:0000313|EMBL:EDT14449.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
clpC; negative regulator of genetic competence MecB/ClpC (EC:3.4.21.-)
Negative regulator of genetic competence MecB/ClpC n=2 Tax=Clostridium perfringens RepID=Q0TML1_CLOP1
L2_019_000G1_scaffold_574_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20296..21309)
DNA (1014bp) protein (338aa)
Protein-arginine kinase {ECO:0000255|HAMAP-Rule:MF_00602}; EC=2.7.14.1 {ECO:0000255|HAMAP-Rule:MF_00602};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Putative ATP:guanido phosphotransferase CPE2442 n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Y2442_CLOPE
ATP:guanido phosphotransferase
L2_019_000G1_scaffold_574_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21293..21820)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RSQ9_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB82149.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_574_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21840..22295)
DNA (456bp) protein (152aa)
Transcriptional regulator CtsR n=10 Tax=Clostridium perfringens RepID=H7CZE9_CLOPF
transcriptional repressor
Transcriptional repressor of class III stress genes {ECO:0000313|EMBL:BAB82150.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_574_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22512..23165
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XHN7_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB82151.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_574_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23216..24898)
DNA (1683bp) protein (561aa)
Mur ligase family protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TMK6_CLOP1
Mur ligase
Mur ligase family protein {ECO:0000313|EMBL:EDT22961.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L2_019_000G1_scaffold_574_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25015..25185)
DNA (171bp) protein (57aa)
Ferredoxin n=11 Tax=Clostridium perfringens RepID=FER_CLOPE
ferredoxin (fdxA)
Putative ferredoxin {ECO:0000313|EMBL:ABG86239.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L2_019_000G1_scaffold_574_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25354..26259)
DNA (906bp) protein (302aa)
PSP1 domain-containing protein n=10 Tax=Clostridium perfringens RepID=H7CZF3_CLOPF
PSP1 domain-containing protein
Signal peptidase-like protein {ECO:0000313|EMBL:BAB82154.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_574_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26262..27185)
DNA (924bp) protein (308aa)
holB; DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III delta' subunit n=5 Tax=Clostridium perfringens RepID=Q8XHN4_CLOPE
DNA polymerase III delta' subunit {ECO:0000313|EMBL:BAB82155.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_019_000G1_scaffold_574_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27207..27536)
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1BK44_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDS79823.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
hypothetical protein
L2_019_000G1_scaffold_574_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27693..27848)
DNA (156bp) protein (52aa)
Uncharacterized protein n=10 Tax=Clostridium perfringens RepID=H7CZF6_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26018.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Displaying items 1-30 of 37 in total

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