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L2_019_000G1_scaffold_635

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_635_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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148..324
DNA (177bp) protein (59aa)
Uncharacterized protein n=107 Tax=Clostridium difficile RepID=T3IS53_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62840.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_019_000G1_scaffold_635_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

550..750
DNA (201bp) protein (67aa)
Cold shock protein n=176 Tax=Clostridium difficile RepID=C9XJM3_CLODC
cspC; cold shock protein
Cold shock protein CspD {ECO:0000313|EMBL:EQE63856.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_635_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(914..1258)
DNA (345bp) protein (115aa)
Uncharacterized protein n=5 Tax=Clostridium difficile RepID=U3YQR9_CLODI
Predicted ATP-binding protein involved in virulence {ECO:0000313|EMBL:CKH18435.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L2_019_000G1_scaffold_635_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1501..1683
DNA (183bp) protein (61aa)
Integrase n=73 Tax=Clostridium difficile RepID=U3ZG33_CLODI
Phage integrase family protein {ECO:0000313|EMBL:EQE63851.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
integrase
L2_019_000G1_scaffold_635_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1754..2599
DNA (846bp) protein (282aa)
NTF2-like N-terminal transpeptidase domain protein n=44 Tax=Clostridium difficile RepID=T2V837_CLODI
putative lipoprotein
NTF2-like N-terminal transpeptidase domain protein {ECO:0000313|EMBL:EQE63855.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_635_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2823..2987)
DNA (165bp) protein (55aa)
Uncharacterized protein n=217 Tax=Clostridium difficile RepID=C9XJM5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK98334.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L2_019_000G1_scaffold_635_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3529..3861)
DNA (333bp) protein (111aa)
Alkylhydroperoxidase AhpD family core domain protein n=106 Tax=Clostridium difficile RepID=G6B8X2_CLODI
decarboxylase
Alkylhydroperoxidase AhpD family core domain protein {ECO:0000313|EMBL:EHJ29713.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_019_000G1_scaffold_635_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4105..4746)
DNA (642bp) protein (214aa)
Uncharacterized protein n=44 Tax=Clostridium difficile RepID=T2V5X5_CLODI
putative membrane protein, DUF1648 family
Immunity protein sdpI {ECO:0000313|EMBL:CKH18510.1}; Putative membrane protein, DUF1648 family {ECO:0000313|EMBL:CDS88006.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88150.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_019_000G1_scaffold_635_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4727..5026)
DNA (300bp) protein (100aa)
ArsR-family transcriptional regulator n=14 Tax=Clostridium difficile RepID=C9XJM8_CLODC
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EHJ29715.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_019_000G1_scaffold_635_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5644..5778)
DNA (135bp) protein (45aa)
Uncharacterized protein n=220 Tax=Clostridium difficile RepID=T3GMH0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQH99637.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_019_000G1_scaffold_635_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5989..6741)
DNA (753bp) protein (251aa)
Sulfite exporter TauE/SafE family protein n=46 Tax=Clostridium difficile RepID=T2V848_CLODI
putative membrane protein
Sulfite exporter TauE/SafE family protein {ECO:0000313|EMBL:EQI83613.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_019_000G1_scaffold_635_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6800..8455)
DNA (1656bp) protein (552aa)
Cupin domain protein n=44 Tax=Clostridium difficile RepID=T2V6D8_CLODI
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCL22237.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
AraC family transcriptional regulator
L2_019_000G1_scaffold_635_13
unknown

Not on your lists

comp(8601..8726)
DNA (126bp) protein (42aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6BRR5_CLODI
L2_019_000G1_scaffold_635_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9727..10806)
DNA (1080bp) protein (360aa)
Putative alpha/beta hydrolase {ECO:0000313|EMBL:CKH18628.1}; EC=3.4.11.5 {ECO:0000313|EMBL:CKH18628.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative proline iminopeptidase (PIP), S33family (EC:3.4.11.5)
Prolyl oligopeptidase family protein n=59 Tax=Clostridium difficile RepID=T2V4P1_CLODI
L2_019_000G1_scaffold_635_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10890..11546)
DNA (657bp) protein (219aa)
Transcriptional regulator, TetR family n=163 Tax=Clostridium difficile RepID=G6BRR3_CLODI
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQH99641.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
TetR family transcriptional regulator
L2_019_000G1_scaffold_635_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11868..12074
DNA (207bp) protein (69aa)
4-hydroxy-2-oxovalerate aldolase domain protein {ECO:0000313|EMBL:EQE63652.1}; EC=4.1.2.- {ECO:0000313|EMBL:EQE63652.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
HpcH/HpaI aldolase/citrate lyase family protein n=103 Tax=Clostridium difficile RepID=T2VMZ7_CLODI
hypothetical protein
L2_019_000G1_scaffold_635_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12227..12655)
DNA (429bp) protein (143aa)
Flavodoxin n=137 Tax=Clostridium difficile RepID=C9XJN3_CLODC
fldX; flavodoxin
Flavodoxin {ECO:0000313|EMBL:CCL30220.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_635_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13131..14072)
DNA (942bp) protein (314aa)
isp; intracellular serine protease (EC:3.4.21.-)
Major intracellular serine protease n=126 Tax=Clostridium difficile RepID=C9XJN4_CLODC
Major intracellular serine protease {ECO:0000313|EMBL:CBE04851.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_019_000G1_scaffold_635_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14583..15395)
DNA (813bp) protein (271aa)
Alpha/beta hydrolase {ECO:0000313|EMBL:CKH19097.1}; EC=3.1.1.24 {ECO:0000313|EMBL:CKH19097.1};; HydD {ECO:0000313|EMBL:AAK77646.1}; Putative hydrolase {ECO:0000313|EMBL:CEJ98599.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
HydD n=124 Tax=Clostridium difficile RepID=Q93QZ6_CLODI
hydD; putative hydrolase
L2_019_000G1_scaffold_635_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15418..16050)
DNA (633bp) protein (211aa)
Transcriptional regulator, TetR family n=77 Tax=Clostridium difficile RepID=G6BRQ8_CLODI
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQE63664.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hydR; Transcriptional regulator, TetR family
L2_019_000G1_scaffold_635_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16394..18049)
DNA (1656bp) protein (552aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=44 Tax=Clostridium difficile RepID=T2V5B3_CLODI
L2_019_000G1_scaffold_635_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18373..18672)
DNA (300bp) protein (100aa)
Uncharacterized protein n=165 Tax=Clostridium difficile RepID=F3Y642_CLOD6
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH19179.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98603.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_019_000G1_scaffold_635_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18932..19612
DNA (681bp) protein (227aa)
VanZ like family protein n=51 Tax=Clostridium difficile RepID=T2TJ08_CLODI
hypothetical protein
Putative VanZ-like transposon protein {ECO:0000313|EMBL:CCL22277.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_019_000G1_scaffold_635_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19722..19979)
DNA (258bp) protein (86aa)
Uncharacterized protein n=169 Tax=Clostridium difficile RepID=C9XJN7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE63643.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_019_000G1_scaffold_635_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20528..20899
DNA (372bp) protein (124aa)
Helix-turn-helix family protein n=204 Tax=Clostridium difficile RepID=C9XJN8_CLODC
phage regulatory protein
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCL30226.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_019_000G1_scaffold_635_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20896..21045)
DNA (150bp) protein (50aa)
Uncharacterized protein n=50 Tax=Clostridium difficile RepID=D5Q3V1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH07271.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
conserved hypothetical protein
L2_019_000G1_scaffold_635_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21701..22597)
DNA (897bp) protein (299aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=70 Tax=Clostridium difficile RepID=T2UL09_CLODI
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EQE63536.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Transcriptional regulator, AraC family
L2_019_000G1_scaffold_635_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22738..24165
DNA (1428bp) protein (476aa)
H+ antiporter-2 family protein n=43 Tax=Clostridium difficile RepID=T2V5V7_CLODI
transporter
Probable transporter {ECO:0000313|EMBL:CBE04862.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_019_000G1_scaffold_635_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24361..26955)
DNA (2595bp) protein (865aa)
ATP-dependent chaperone protein ClpB n=153 Tax=Clostridium difficile RepID=T3GP03_CLODC
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
clpB; chaperone protein
L2_019_000G1_scaffold_635_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26992..27588)
DNA (597bp) protein (199aa)
Uncharacterized protein n=179 Tax=Clostridium difficile RepID=C9XJP2_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30231.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 37 in total

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