ggKbase home page

L2_019_000G1_scaffold_4316

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_4316_1
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..116)
DNA (114bp) protein (38aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=941429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae CDC 74-1112.;"
Uracil-DNA glycosylase n=3 Tax=Escherichia coli RepID=M8SM47_ECOLX
ung; uracil-DNA-glycosylase
L2_019_000G1_scaffold_4316_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

421..804
DNA (384bp) protein (128aa)
Autonomous glycyl radical cofactor n=561 Tax=Enterobacteriaceae RepID=GRCA_ECO27
yfiD; autonomous glycyl radical cofactor GrcA
Autonomous glycyl radical cofactor {ECO:0000256|HAMAP-Rule:MF_00806, ECO:0000256|SAAS:SAAS00028662}; TaxID=1269003 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908658.;"
L2_019_000G1_scaffold_4316_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(860..1447)
DNA (588bp) protein (196aa)
Cysteine/O-acetylserine efflux protein n=7 Tax=Escherichia coli RepID=T6GYW6_ECOLX
Cysteine/O-acetylserine efflux protein {ECO:0000313|EMBL:EQP49928.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
yfiK; neutral amino acid efflux protein
L2_019_000G1_scaffold_4316_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1550..2431
DNA (882bp) protein (294aa)
LysR family transcriptional regulator n=105 Tax=Escherichia RepID=E1S325_ECOUM
yfiE; transcriptional regulator YfiE
Transcriptional regulator {ECO:0000313|EMBL:EQP49927.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L2_019_000G1_scaffold_4316_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2464..3798)
DNA (1335bp) protein (445aa)
ATP-dependent RNA helicase SrmB {ECO:0000256|HAMAP-Rule:MF_00967}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00967};; TaxID=749533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 84-1.;"
ATP-dependent RNA helicase SrmB n=1254 Tax=Enterobacteriaceae RepID=C3SZ18_ECOLX
srmB; ATP-dependent RNA helicase SrmB
L2_019_000G1_scaffold_4316_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3930..4667
DNA (738bp) protein (246aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
tRNA1(Val) (adenine(37)-N6)-methyltransferase n=38 Tax=Escherichia coli RepID=E2QQ35_ECOLX
yfiC; hypothetical protein
L2_019_000G1_scaffold_4316_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4652..4870)
DNA (219bp) protein (73aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L-aspartate oxidase n=1 Tax=Escherichia coli P0299438.4 RepID=N2Y1P4_ECOLX
nadB; L-aspartate oxidase
L2_019_000G1_scaffold_4316_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4873..6156)
DNA (1284bp) protein (428aa)
nadB; L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L-aspartate oxidase n=1 Tax=Escherichia coli UMEA 3489-1 RepID=V8TGW2_ECOLX
L2_019_000G1_scaffold_4316_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6564..7139
DNA (576bp) protein (192aa)
ECF RNA polymerase sigma-E factor n=1376 Tax=Enterobacteriaceae RepID=RPOE_ECO57
rpoE; RNA polymerase, sigma 24 (sigma E) factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1182677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE70.;"
L2_019_000G1_scaffold_4316_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7172..7822
DNA (651bp) protein (217aa)
Anti-sigma-E factor RseA n=938 Tax=Enterobacteriaceae RepID=RSEA_ECOL6
rseA; anti-RNA polymerase sigma factor SigE
Anti-sigma-E factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Regulator of SigE {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E anti-sigma factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E factor negative regulatory protein {ECO:0000256|PIRNR:PIRNR016938}; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
L2_019_000G1_scaffold_4316_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7822..8532
DNA (711bp) protein (237aa)
Sigma-E factor regulatory protein RseB n=23 Tax=Escherichia coli RepID=F4V4T5_ECOLX
rseB; Sigma-E factor regulatory protein rseB
Sigma-E factor regulatory protein rseB {ECO:0000313|EMBL:EZJ49812.1}; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
Displaying 11 items

View Taxonomy