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L2_019_000G1_scaffold_1293

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_1293_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..600)
DNA (600bp) protein (200aa)
2-keto-3-deoxy-L-rhamnonate aldolase {ECO:0000256|HAMAP-Rule:MF_01290}; Short=KDR aldolase {ECO:0000256|HAMAP-Rule:MF_01290};; EC=4.1.2.53 {ECO:0000256|HAMAP-Rule:MF_01290};; 2-dehydro-3-deoxyrhamnonate aldolase {ECO:0000256|HAMAP-Rule:MF_01290}; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
alpha-dehydro-beta-deoxy-D-glucarate aldolase n=1 Tax=Escherichia coli RepID=UPI0003803C29
putative aldolase
L2_019_000G1_scaffold_1293_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(618..1907)
DNA (1290bp) protein (430aa)
Inner membrane transporter RhmT n=6 Tax=Escherichia coli RepID=T6HAL7_ECOLX
Inner membrane transporter RhmT {ECO:0000313|EMBL:EQP50567.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
transporter
L2_019_000G1_scaffold_1293_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1964..3169)
DNA (1206bp) protein (402aa)
L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288}; Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};; EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L-rhamnonate dehydratase n=121 Tax=Escherichia coli RepID=RHMD_ECOL6
yfaW; mandelate racemase/muconate lactonizing protein
L2_019_000G1_scaffold_1293_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3184..3966)
DNA (783bp) protein (261aa)
Uncharacterized HTH-type transcriptional regulator n=177 Tax=Escherichia coli RepID=E2QPB3_ECOLX
yfaX; transcriptional regulator YfaX
Transcriptional regulator YfaX {ECO:0000313|EMBL:EOW97183.1}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L2_019_000G1_scaffold_1293_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4186..5388)
DNA (1203bp) protein (401aa)
CinA-like protein n=222 Tax=Escherichia RepID=A1ADA1_ECOK1
competence damage-inducible protein A
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L2_019_000G1_scaffold_1293_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5488..6030)
DNA (543bp) protein (181aa)
Uncharacterized protein n=3 Tax=Escherichia coli RepID=G7REI2_ECOC2
yfaZ; hypothetical protein
Putative outer membrane porin protein {ECO:0000313|EMBL:CAR03679.1}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L2_019_000G1_scaffold_1293_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6309..6734
DNA (426bp) protein (142aa)
Nucleoside triphosphatase NudI {ECO:0000255|HAMAP-Rule:MF_01846}; EC=3.6.1.19 {ECO:0000255|HAMAP-Rule:MF_01846};; Pyrimidine deoxynucleoside triphosphate diphosphatase {ECO:0000255|HAMAP-Rule:MF_01846}; dCTP diphosphatase {ECO:0000255|HAMAP-Rule:MF_01846}; EC=3.6.1.12 {ECO:0000255|HAMAP-Rule:MF_01846};; dTTP diphosphatase {ECO:0000255|HAMAP-Rule:MF_01846}; EC=3.6.1.- {ECO:0000255|HAMAP-Rule:MF_01846};; dUTP diphosphatase {ECO:0000255|HAMAP-Rule:MF_01846}; EC=3.6.1.23 {ECO:0000255|HAMAP-Rule:MF_01846};; TaxID=362663 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O6:K15:H31 (strain 536 / UPEC).;"
Nucleoside triphosphatase NudI n=253 Tax=Escherichia coli RepID=NUDI_ECO81
yfaO; putative Nudix hydrolase yfaO
L2_019_000G1_scaffold_1293_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6773..7375)
DNA (603bp) protein (201aa)
Lipopolysaccharide core heptose(II)-phosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01868}; EC=3.1.3.- {ECO:0000256|HAMAP-Rule:MF_01868};; Flags: Precursor;; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
Lipopolysaccharide core heptose(II)-phosphate phosphatase n=313 Tax=Escherichia RepID=AIS_ECO27
hypothetical protein
L2_019_000G1_scaffold_1293_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7665..8822
DNA (1158bp) protein (386aa)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01167, ECO:0000256|SAAS:SAAS00016536}; EC=2.6.1.87 {ECO:0000256|HAMAP-Rule:MF_01167, ECO:0000256|SAAS:SAAS00016523};; UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase {ECO:0000256|HAMAP-Rule:MF_01167}; UDP-4-amino-4-deoxy-L-arabinose aminotransferase {ECO:0000256|HAMAP-Rule:MF_01167}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
arnB; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC:2.6.1.-)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase n=32 Tax=Escherichia coli RepID=L3B4F7_ECOLX
L2_019_000G1_scaffold_1293_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8826..9794
DNA (969bp) protein (323aa)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase {ECO:0000256|HAMAP-Rule:MF_01164, ECO:0000256|SAAS:SAAS00016541}; EC=2.4.2.53 {ECO:0000256|HAMAP-Rule:MF_01164, ECO:0000256|SAAS:SAAS00016513};; Undecaprenyl-phosphate Ara4FN transferase {ECO:0000256|HAMAP-Rule:MF_01164}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase (EC:2.-.-.-)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase n=6 Tax=Escherichia coli RepID=T6HP09_ECOLX
L2_019_000G1_scaffold_1293_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9794..11776
DNA (1983bp) protein (661aa)
yfbG; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC:4.1.1.35)
Bifunctional polymyxin resistance protein ArnA n=6 Tax=Escherichia coli RepID=T6HKU4_ECOLX
Bifunctional polymyxin resistance protein ArnA {ECO:0000256|HAMAP-Rule:MF_01166, ECO:0000256|SAAS:SAAS00018678}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L2_019_000G1_scaffold_1293_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11773..12663
DNA (891bp) protein (297aa)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD {ECO:0000256|HAMAP-Rule:MF_01870, ECO:0000256|SAAS:SAAS00011687}; EC=3.5.1.n3 {ECO:0000256|HAMAP-Rule:MF_01870, ECO:0000256|SAAS:SAAS00011681};; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD n=127 Tax=Escherichia coli RepID=ARND_ECO81
yfbH; hypothetical protein
L2_019_000G1_scaffold_1293_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12663..14315
DNA (1653bp) protein (551aa)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase {ECO:0000255|HAMAP-Rule:MF_01165}; EC=2.4.2.43 {ECO:0000255|HAMAP-Rule:MF_01165};; 4-amino-4-deoxy-L-arabinose lipid A transferase {ECO:0000255|HAMAP-Rule:MF_01165}; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase {ECO:0000255|HAMAP-Rule:MF_01165}; Undecaprenyl phosphate-alpha-L-Ara4N transferase {ECO:0000255|HAMAP-Rule:MF_01165}; TaxID=405955 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O1:K1 / APEC.;"
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase n=83 Tax=Escherichia RepID=ARNT_ECOK1
arnT; 4-amino-4-deoxy-L-arabinose transferase
L2_019_000G1_scaffold_1293_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14312..14647
DNA (336bp) protein (112aa)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE n=233 Tax=Escherichia RepID=ARNE_ECO45
hypothetical protein
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE {ECO:0000256|HAMAP-Rule:MF_01869, ECO:0000256|SAAS:SAAS00166808}; Short=L-Ara4N-phosphoundecaprenol flippase subunit ArnE {ECO:0000256|HAMAP-Rule:MF_01869};; Undecaprenyl phosphate-aminoarabinose flippase subunit ArnE {ECO:0000256|HAMAP-Rule:MF_01869}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L2_019_000G1_scaffold_1293_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14647..15033
DNA (387bp) protein (129aa)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF n=341 Tax=Escherichia RepID=ARNF_ECO27
yfbJ; hypothetical protein
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF {ECO:0000256|HAMAP-Rule:MF_00538, ECO:0000256|SAAS:SAAS00016708}; Short=L-Ara4N-phosphoundecaprenol flippase subunit ArnF {ECO:0000256|HAMAP-Rule:MF_00538};; Undecaprenyl phosphate-aminoarabinose flippase subunit ArnF {ECO:0000256|HAMAP-Rule:MF_00538}; TaxID=1280991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 41 (4-2677849).;"
L2_019_000G1_scaffold_1293_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15027..15293)
DNA (267bp) protein (89aa)
Signal transduction protein pmrD n=321 Tax=Escherichia RepID=E2QPC5_ECOLX
pmrD; polymyxin B resistance protein PmrD
Polymyxin B resistance protein PmrD {ECO:0000313|EMBL:CKI28677.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L2_019_000G1_scaffold_1293_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15403..16758)
DNA (1356bp) protein (452aa)
menE; O-succinylbenzoic acid--CoA ligase (EC:6.2.1.26)
2-succinylbenzoate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_00731}; EC=6.2.1.26 {ECO:0000256|HAMAP-Rule:MF_00731};; o-succinylbenzoyl-CoA synthetase {ECO:0000256|HAMAP-Rule:MF_00731}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
O-succinylbenzoic acid--CoA ligase n=87 Tax=Escherichia RepID=A1ADB2_ECOK1
L2_019_000G1_scaffold_1293_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16755..17717)
DNA (963bp) protein (321aa)
o-succinylbenzoate synthase {ECO:0000256|HAMAP-Rule:MF_00470, ECO:0000256|SAAS:SAAS00050627}; Short=OSB synthase {ECO:0000256|HAMAP-Rule:MF_00470};; Short=OSBS {ECO:0000256|HAMAP-Rule:MF_00470};; EC=4.2.1.113 {ECO:0000256|HAMAP-Rule:MF_00470, ECO:0000256|SAAS:SAAS00050577};; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00470}; o-succinylbenzoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00470}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
O-succinylbenzoate synthase (EC:4.2.1.-)
o-succinylbenzoate synthase n=6 Tax=Escherichia coli RepID=T6H0T5_ECOLX
L2_019_000G1_scaffold_1293_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17717..17815)
DNA (99bp) protein (33aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=868135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1C.;"
Naphthoate synthase n=10 Tax=Salmonella enterica I RepID=B5RCD2_SALG2
MenB
Displaying 19 items

View Taxonomy