ggKbase home page

L2_019_000G1_scaffold_988

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000G1_scaffold_988_1
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(145..2049)
DNA (1905bp) protein (635aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=7 Tax=Lactobacillus fermentum RepID=B2GEU2_LACF3
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1366052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum MTCC 8711.;"
L2_019_000G1_scaffold_988_2
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2064..3452)
DNA (1389bp) protein (463aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
tRNA modification GTPase MnmE n=5 Tax=Lactobacillus fermentum RepID=B2GEU3_LACF3
tRNA modification GTPase TrmE
L2_019_000G1_scaffold_988_3
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3598..4419)
DNA (822bp) protein (274aa)
RNA-binding protein n=5 Tax=Lactobacillus fermentum RepID=R4RKT5_LACFE
Uncharacterized protein {ECO:0000313|EMBL:CDI68277.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
RNA-binding protein
L2_019_000G1_scaffold_988_4
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4488..5321)
DNA (834bp) protein (278aa)
Membrane protein insertase YidC n=2 Tax=Lactobacillus fermentum RepID=T0SEU7_LACFE
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Flags: Precursor;; TaxID=1582 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei.;"
hypothetical protein
L2_019_000G1_scaffold_988_5
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5337..5681)
DNA (345bp) protein (115aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1366052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum MTCC 8711.;"
Ribonuclease P protein component n=1 Tax=Lactobacillus fermentum MTCC 8711 RepID=T0SM08_LACFE
rnpA; ribonuclease P
L2_019_000G1_scaffold_988_6
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6004..6366)
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Lactobacillus fermentum RepID=C0WVT7_LACFE
Uncharacterized protein {ECO:0000313|EMBL:KGP68663.1}; TaxID=1582 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei.;"
hypothetical protein
L2_019_000G1_scaffold_988_7
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6449..7765
DNA (1317bp) protein (439aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Lactobacillus fermentum MTCC 8711 RepID=T0TLU7_LACFE
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1366052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum MTCC 8711.;"
Chromosomal replication initiator protein dnaA
L2_019_000G1_scaffold_988_8
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7930..9069
DNA (1140bp) protein (380aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
DNA polymerase III subunit beta n=2 Tax=Lactobacillus fermentum RepID=B2GEU9_LACF3
DNA-directed DNA polymerase III subunit beta
L2_019_000G1_scaffold_988_9
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9291..9509
DNA (219bp) protein (73aa)
S4 domain protein YaaA n=6 Tax=Lactobacillus fermentum RepID=C0WVU0_LACFE
putative RNA-binding S4 protein
S4 domain protein YaaA {ECO:0000313|EMBL:EEX26174.1}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
L2_019_000G1_scaffold_988_10
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9519..10640
DNA (1122bp) protein (374aa)
DNA replication and repair protein RecF n=3 Tax=Lactobacillus fermentum RepID=D8IGA5_LACFC
DNA replication and repair protein RecF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
L2_019_000G1_scaffold_988_11
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10640..12589
DNA (1950bp) protein (650aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1366052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum MTCC 8711.;"
DNA gyrase subunit B n=1 Tax=Lactobacillus fermentum MTCC 8711 RepID=T0TS28_LACFE
DNA gyrase subunit B
L2_019_000G1_scaffold_988_12
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


12615..15125
DNA (2511bp) protein (837aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
DNA gyrase subunit A n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DSB6_LACFE
DNA gyrase subunit A
L2_019_000G1_scaffold_988_13
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


15331..15624
DNA (294bp) protein (98aa)
30S ribosomal protein S6 n=5 Tax=Lactobacillus fermentum RepID=RS6_LACF3
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1366052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum MTCC 8711.;"
L2_019_000G1_scaffold_988_14
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15665..16393
DNA (729bp) protein (243aa)
Single-stranded DNA-binding protein n=1 Tax=Lactobacillus fermentum MTCC 8711 RepID=T0SJE1_LACFE
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
Single-stranded DNA-binding protein
L2_019_000G1_scaffold_988_15
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


16432..16668
DNA (237bp) protein (79aa)
30S ribosomal protein S18 n=8 Tax=Lactobacillus RepID=RS18_LACF3
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
L2_019_000G1_scaffold_988_16
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16793..18826
DNA (2034bp) protein (678aa)
Putative uncharacterized protein n=1 Tax=Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) RepID=B2GEV7_LACF3
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAG26346.1}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
L2_019_000G1_scaffold_988_17
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


18826..19278
DNA (453bp) protein (151aa)
50S ribosomal protein L9 n=6 Tax=Lactobacillus fermentum RepID=RL9_LACF3
rplI; 50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
L2_019_000G1_scaffold_988_18
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19323..20726
DNA (1404bp) protein (468aa)
Replicative DNA helicase n=6 Tax=Lactobacillus fermentum RepID=B2GEV9_LACF3
replicative DNA helicase
Replicative DNA helicase {ECO:0000313|EMBL:CDI68292.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
L2_019_000G1_scaffold_988_19
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20810..21985
DNA (1176bp) protein (392aa)
Transporter, major facilitator family protein n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DSC3_LACFE
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEX26184.1}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
Major facilitator transporter
L2_019_000G1_scaffold_988_20
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21997..22329
DNA (333bp) protein (111aa)
Uncharacterized protein n=6 Tax=Lactobacillus fermentum RepID=R4RHX0_LACFE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJY07555.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
Displaying 20 items

View Taxonomy